Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 MAGEA5-201ENST00000446757 942 ntBASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 AC019193.1-201ENST00000506678 823 ntBASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 AC140658.4-201ENST00000561990 352 ntBASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 KRT8P31-201ENST00000504812 1408 ntBASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 BRD7P5-201ENST00000299197 1822 ntBASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 AC012617.1-204ENST00000586340 2305 ntBASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CCDC60Q8IWA6 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 AC015802.1-201ENST00000588104 1449 ntBASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 AL583805.1-201ENST00000391389 531 ntBASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 AC092506.1-202ENST00000401022 528 ntBASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 HINT2P1-201ENST00000419438 481 ntBASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC60Q8IWA6 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 CCT8L1P-201ENST00000465400 1674 ntBASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 KRT18P9-201ENST00000604826 1300 ntBASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 KRT17P5-201ENST00000332088 839 ntBASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AL627231.1-201ENST00000394467 1125 ntBASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 216.2 ms