Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 FAM197Y1-201ENST00000421178 764 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC034268.1-201ENST00000441047 882 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 MTRF1LP2-201ENST00000506027 1122 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 QPRT-203ENST00000562473 579 ntTSL 3 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC002347.1-201ENST00000569543 541 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC008403.3-201ENST00000598924 454 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC097359.3-201ENST00000603982 1210 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ELMOD3-203ENST00000409013 2413 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CTAGE13P-201ENST00000416709 2446 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 OTOG-203ENST00000399397 9948 ntAPPRIS P3 TSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SCN4B-201ENST00000324727 4484 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 TMCC2-208ENST00000545499 3339 ntAPPRIS ALT2 TSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 DHODH-205ENST00000572887 4824 ntAPPRIS ALT1 TSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ACADL-201ENST00000233710 2543 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AP001046.1-201ENST00000435702 2816 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ZNF630-206ENST00000442455 2829 ntAPPRIS P2 TSL 4 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 FBXO9-202ENST00000323557 3418 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CACNB1-212ENST00000622445 3722 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 MB21D1-201ENST00000370315 3182 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ABLIM3-203ENST00000356541 2290 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ABLIM3-211ENST00000517451 2287 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 C9orf3-201ENST00000277198 1966 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AP000350.6-201ENST00000609510 5637 ntBASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 HDGFL3-201ENST00000299633 12733 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 GRIK1-206ENST00000399913 3234 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ASTN1-203ENST00000367657 4187 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ZIC4-217ENST00000525172 4152 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 PLEKHG5-205ENST00000377740 3550 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SIRPG-202ENST00000303415 1716 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SIRPG-204ENST00000381580 1732 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 KCNAB2-201ENST00000164247 4273 ntAPPRIS P4 TSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SLC45A3-201ENST00000367145 3341 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SPCS1-206ENST00000619898 4254 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CLINT1-206ENST00000523094 3987 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 ARL4C-201ENST00000339728 3385 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 IGSF9-202ENST00000368094 4044 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 AL109976.1-201ENST00000621919 5678 ntBASIC8.96□□□□□ -0.97
LINC00643Q86TS7 ZMIZ2-215ENST00000615423 2772 ntTSL 5 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 CAMKK2-205ENST00000392474 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 LONRF2-201ENST00000393437 13912 ntAPPRIS P2 TSL 5 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 SHC1-203ENST00000368449 2879 ntTSL 5 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 ZNF423-201ENST00000262383 4578 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 KCTD21-AS1-207ENST00000600795 1549 ntBASIC8.96□□□□□ -0.97
LINC00643Q86TS7 SLC25A5-AS1-203ENST00000446986 1874 ntTSL 2 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 DNAJB12-203ENST00000444643 3278 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 COL8A1-201ENST00000261037 5705 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 TAF5L-204ENST00000366676 2956 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
LINC00643Q86TS7 LDLRAD3-201ENST00000315571 3798 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 NEXMIF-201ENST00000055682 11719 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 CACNA1C-204ENST00000347598 6655 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 MEGF8-203ENST00000378073 11034 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 HERC2P3-204ENST00000426501 5995 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
LINC00643Q86TS7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms