Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
RNF4P78317 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
RNF4P78317 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 AC011742.3-201ENST00000439053 820 ntBASIC13.49□□□□□ -0.25
RNF4P78317 AC125604.1-201ENST00000496255 707 ntBASIC13.49□□□□□ -0.25
RNF4P78317 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.49□□□□□ -0.25
RNF4P78317 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 AC005586.2-201ENST00000563946 837 ntBASIC13.49□□□□□ -0.25
RNF4P78317 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 AC026740.1-201ENST00000607068 791 ntBASIC13.49□□□□□ -0.25
RNF4P78317 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
RNF4P78317 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
RNF4P78317 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.49□□□□□ -0.25
RNF4P78317 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 AC097359.2-201ENST00000604992 2389 ntBASIC13.49□□□□□ -0.25
RNF4P78317 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
RNF4P78317 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.48□□□□□ -0.25
RNF4P78317 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.48□□□□□ -0.25
RNF4P78317 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 TUBBP5-203ENST00000508529 1334 ntBASIC13.48□□□□□ -0.25
RNF4P78317 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.48□□□□□ -0.25
RNF4P78317 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.48□□□□□ -0.25
RNF4P78317 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.48□□□□□ -0.25
RNF4P78317 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
RNF4P78317 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 AL008707.1-201ENST00000422498 534 ntBASIC13.48□□□□□ -0.25
RNF4P78317 AC078875.1-201ENST00000431907 724 ntBASIC13.48□□□□□ -0.25
RNF4P78317 CALR4P-201ENST00000431943 946 ntBASIC13.48□□□□□ -0.25
RNF4P78317 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 ST13P19-201ENST00000442505 1124 ntBASIC13.48□□□□□ -0.25
RNF4P78317 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.48□□□□□ -0.25
RNF4P78317 AC022494.1-201ENST00000466044 728 ntBASIC13.48□□□□□ -0.25
RNF4P78317 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC13.48□□□□□ -0.25
RNF4P78317 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 NDUFV2P1-201ENST00000596415 907 ntBASIC13.48□□□□□ -0.25
RNF4P78317 AL645939.5-201ENST00000606834 243 ntBASIC13.48□□□□□ -0.25
RNF4P78317 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms