Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 AC007686.3-201ENST00000619017 3487 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 ELK2AP-201ENST00000392510 1007 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.98□□□□□ -0.33
GFRA1P56159 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 AC007274.2-201ENST00000421675 662 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 RN7SL258P-201ENST00000478664 300 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.98□□□□□ -0.33
GFRA1P56159 AC116345.2-201ENST00000512837 523 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 FGFR3P5-201ENST00000564496 886 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
GFRA1P56159 AC079336.7-201ENST00000623428 1078 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
GFRA1P56159 AC015909.3-201ENST00000572855 1794 ntBASIC12.98□□□□□ -0.33
GFRA1P56159 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC12.98□□□□□ -0.33
GFRA1P56159 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
GFRA1P56159 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
GFRA1P56159 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.98□□□□□ -0.33
GFRA1P56159 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
GFRA1P56159 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC12.97□□□□□ -0.33
GFRA1P56159 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC12.97□□□□□ -0.33
GFRA1P56159 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
GFRA1P56159 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC12.97□□□□□ -0.33
GFRA1P56159 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC12.97□□□□□ -0.33
GFRA1P56159 RTN3P1-201ENST00000536295 711 ntBASIC12.97□□□□□ -0.33
GFRA1P56159 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 STUB1-204ENST00000564370 875 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 AC093752.3-201ENST00000567343 901 ntBASIC12.97□□□□□ -0.33
GFRA1P56159 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 MIR6769A-201ENST00000617340 73 ntBASIC12.97□□□□□ -0.33
GFRA1P56159 AC068587.10-201ENST00000641210 219 ntBASIC12.97□□□□□ -0.33
GFRA1P56159 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
GFRA1P56159 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
GFRA1P56159 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC12.97□□□□□ -0.33
GFRA1P56159 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms