Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NUP98P52948 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NUP98P52948 RHOC-205ENST00000369636 786 ntTSL 2 BASIC17.58■□□□□ 0.41
NUP98P52948 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.58■□□□□ 0.41
NUP98P52948 KRT18P62-201ENST00000446618 1287 ntBASIC17.58■□□□□ 0.41
NUP98P52948 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
NUP98P52948 AC100858.1-201ENST00000514059 1228 ntBASIC17.58■□□□□ 0.41
NUP98P52948 MT3-202ENST00000561640 514 ntTSL 3 BASIC17.58■□□□□ 0.41
NUP98P52948 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
NUP98P52948 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
NUP98P52948 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
NUP98P52948 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP98P52948 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.58■□□□□ 0.41
NUP98P52948 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP98P52948 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
NUP98P52948 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
NUP98P52948 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
NUP98P52948 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
NUP98P52948 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 MIR1301-201ENST00000408518 82 ntBASIC17.58■□□□□ 0.4
NUP98P52948 ACTBP14-201ENST00000411655 1089 ntBASIC17.58■□□□□ 0.4
NUP98P52948 KRT18P4-201ENST00000422599 1288 ntBASIC17.58■□□□□ 0.4
NUP98P52948 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
NUP98P52948 RN7SL375P-201ENST00000492442 298 ntBASIC17.58■□□□□ 0.4
NUP98P52948 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 BATF-202ENST00000555504 361 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
NUP98P52948 AL160191.2-201ENST00000603975 601 ntBASIC17.58■□□□□ 0.4
NUP98P52948 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
NUP98P52948 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.58■□□□□ 0.4
NUP98P52948 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP98P52948 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP98P52948 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP98P52948 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP98P52948 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP98P52948 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 RN7SL351P-201ENST00000469306 248 ntBASIC17.57■□□□□ 0.4
NUP98P52948 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP98P52948 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP98P52948 AL139424.3-202ENST00000641619 917 ntBASIC17.57■□□□□ 0.4
NUP98P52948 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 BX640514.1-201ENST00000583223 1918 ntBASIC17.57■□□□□ 0.4
NUP98P52948 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
NUP98P52948 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP98P52948 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP98P52948 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
NUP98P52948 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.56■□□□□ 0.4
NUP98P52948 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP98P52948 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NUP98P52948 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP98P52948 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC17.56■□□□□ 0.4
NUP98P52948 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NUP98P52948 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
NUP98P52948 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC17.56■□□□□ 0.4
NUP98P52948 AP000244.1-201ENST00000424582 201 ntBASIC17.56■□□□□ 0.4
NUP98P52948 AL929302.1-201ENST00000426556 871 ntBASIC17.56■□□□□ 0.4
NUP98P52948 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms