Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 KRT8P24-201ENST00000560290 1559 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ATP5G2P4-201ENST00000442175 420 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 GCOM2-201ENST00000509133 1104 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AL603764.1-201ENST00000636452 321 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AC111170.3-201ENST00000624282 2464 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 MEX3B-202ENST00000558133 4333 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 AL031595.1-201ENST00000623969 4709 ntBASIC11.16□□□□□ -0.62
HLA-DMBP28068 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC11.16□□□□□ -0.62
HLA-DMBP28068 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
HLA-DMBP28068 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC11.15□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms