Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.62■□□□□ 0.41
COL5A3P25940 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.62■□□□□ 0.41
COL5A3P25940 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.62■□□□□ 0.41
COL5A3P25940 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.62■□□□□ 0.41
COL5A3P25940 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 NHP2P1-201ENST00000335274 462 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL5A3P25940 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.62■□□□□ 0.41
COL5A3P25940 KRT8P30-201ENST00000432100 650 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 PSME2P2-201ENST00000453033 700 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 CDK4P1-201ENST00000454213 828 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC17.62■□□□□ 0.41
COL5A3P25940 GPX3-202ENST00000517973 612 ntTSL 3 BASIC17.62■□□□□ 0.41
COL5A3P25940 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC17.62■□□□□ 0.41
COL5A3P25940 BAP1-211ENST00000615113 489 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC17.62■□□□□ 0.41
COL5A3P25940 AL357143.1-203ENST00000639750 881 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 AC092384.3-202ENST00000564646 2873 ntBASIC17.62■□□□□ 0.41
COL5A3P25940 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A3P25940 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A3P25940 WASH7P-201ENST00000488147 1351 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 SNU13-204ENST00000402458 462 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A3P25940 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A3P25940 HNRNPA1P10-201ENST00000444945 962 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A3P25940 RNU1-80P-201ENST00000459500 161 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A3P25940 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A3P25940 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A3P25940 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A3P25940 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A3P25940 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A3P25940 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL5A3P25940 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A3P25940 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A3P25940 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A3P25940 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A3P25940 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL5A3P25940 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL5A3P25940 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A3P25940 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A3P25940 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 RN7SL523P-201ENST00000484401 298 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A3P25940 MIR2278-201ENST00000516344 96 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 CTBP2P6-201ENST00000526402 1229 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 MIR4254-201ENST00000581063 76 ntBASIC17.61■□□□□ 0.41
COL5A3P25940 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.61■□□□□ 0.41
COL5A3P25940 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC17.6■□□□□ 0.41
COL5A3P25940 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 LILRP2-202ENST00000413572 1383 ntBASIC17.6■□□□□ 0.41
COL5A3P25940 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL5A3P25940 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.6■□□□□ 0.41
COL5A3P25940 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC17.6■□□□□ 0.41
COL5A3P25940 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.6■□□□□ 0.41
COL5A3P25940 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC17.6■□□□□ 0.41
COL5A3P25940 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL5A3P25940 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.6■□□□□ 0.41
COL5A3P25940 NRADDP-202ENST00000641269 1585 ntBASIC17.6■□□□□ 0.41
COL5A3P25940 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL5A3P25940 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL5A3P25940 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A3P25940 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
COL5A3P25940 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC17.59■□□□□ 0.41
COL5A3P25940 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.59■□□□□ 0.41
COL5A3P25940 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 SERBP1P2-201ENST00000436888 1164 ntBASIC17.59■□□□□ 0.41
COL5A3P25940 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 AC004923.3-201ENST00000527532 355 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms