Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.84□□□□□ -0.03
COL9A1P20849 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL9A1P20849 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL9A1P20849 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
COL9A1P20849 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.83□□□□□ -0.03
COL9A1P20849 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL9A1P20849 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
COL9A1P20849 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.83□□□□□ -0.03
COL9A1P20849 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL9A1P20849 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 HLA-DMA-202ENST00000395303 1007 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 ERP29P1-201ENST00000442902 706 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 AL035414.1-201ENST00000451327 857 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 TRIM36-IT1-201ENST00000503723 881 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 AC022447.5-201ENST00000504817 392 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC14.83□□□□□ -0.04
COL9A1P20849 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.83□□□□□ -0.04
COL9A1P20849 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
COL9A1P20849 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC14.83□□□□□ -0.04
COL9A1P20849 AC091304.3-201ENST00000566500 716 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
COL9A1P20849 NAT9-204ENST00000578822 839 ntTSL 3 BASIC14.83□□□□□ -0.04
COL9A1P20849 TRMT112P3-201ENST00000580149 358 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 TLE2-205ENST00000586422 389 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 AC133540.1-201ENST00000620845 1019 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
COL9A1P20849 AC004777.1-201ENST00000624317 287 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 AC007950.2-201ENST00000615045 2347 ntBASIC14.83□□□□□ -0.04
COL9A1P20849 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
COL9A1P20849 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.83□□□□□ -0.04
COL9A1P20849 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL9A1P20849 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL9A1P20849 FCAR-203ENST00000355524 1483 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 AC008741.2-201ENST00000612792 3115 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms