Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.53□□□□□ -0.08
COL6A3P12111 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 GGT8P-201ENST00000418938 532 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AP001775.1-201ENST00000532608 586 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 RN7SL5P-201ENST00000581458 321 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 AC136475.7-201ENST00000602949 592 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL6A3P12111 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
COL6A3P12111 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.52□□□□□ -0.08
COL6A3P12111 PCDHA14-201ENST00000506751 2298 ntBASIC14.52□□□□□ -0.08
COL6A3P12111 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.08
COL6A3P12111 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.52□□□□□ -0.08
COL6A3P12111 TFAM-201ENST00000373895 973 ntTSL 2 BASIC14.52□□□□□ -0.08
COL6A3P12111 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC14.52□□□□□ -0.08
COL6A3P12111 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
COL6A3P12111 SWI5-204ENST00000419867 1048 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 ASLP1-201ENST00000428790 637 ntBASIC14.52□□□□□ -0.08
COL6A3P12111 IFNWP19-201ENST00000438727 566 ntBASIC14.52□□□□□ -0.08
COL6A3P12111 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 RN7SL452P-201ENST00000482923 291 ntBASIC14.52□□□□□ -0.08
COL6A3P12111 AC011389.2-201ENST00000514811 365 ntTSL 2 BASIC14.52□□□□□ -0.08
COL6A3P12111 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 AC005154.1-202ENST00000578293 999 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC14.52□□□□□ -0.08
COL6A3P12111 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 AC006511.4-201ENST00000631571 561 ntTSL 3 BASIC14.52□□□□□ -0.08
COL6A3P12111 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A3P12111 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A3P12111 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A3P12111 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A3P12111 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.52□□□□□ -0.09
COL6A3P12111 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A3P12111 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A3P12111 AC017081.1-201ENST00000420063 823 ntBASIC14.52□□□□□ -0.09
COL6A3P12111 AL049792.1-201ENST00000424708 1262 ntBASIC14.52□□□□□ -0.09
COL6A3P12111 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC14.52□□□□□ -0.09
COL6A3P12111 RPL3P9-201ENST00000463217 1183 ntBASIC14.52□□□□□ -0.09
COL6A3P12111 FPGT-205ENST00000482102 561 ntTSL 4 BASIC14.52□□□□□ -0.09
COL6A3P12111 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A3P12111 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A3P12111 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL6A3P12111 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL6A3P12111 AC004112.1-201ENST00000431064 561 ntTSL 3 BASIC14.51□□□□□ -0.09
COL6A3P12111 BMF-209ENST00000561282 747 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC14.51□□□□□ -0.09
COL6A3P12111 HNRNPA1P11-201ENST00000580106 956 ntBASIC14.51□□□□□ -0.09
COL6A3P12111 AL137028.2-201ENST00000614601 256 ntBASIC14.51□□□□□ -0.09
COL6A3P12111 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A3P12111 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 TUBAP-201ENST00000425085 1352 ntBASIC14.51□□□□□ -0.09
COL6A3P12111 PCDHA12-202ENST00000613593 2588 ntBASIC14.51□□□□□ -0.09
COL6A3P12111 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A3P12111 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
COL6A3P12111 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
COL6A3P12111 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A3P12111 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 TRAIP-202ENST00000469027 1145 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A3P12111 RN7SL22P-201ENST00000471800 269 ntBASIC14.51□□□□□ -0.09
COL6A3P12111 FP325317.1-201ENST00000539936 1042 ntBASIC14.51□□□□□ -0.09
COL6A3P12111 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC14.51□□□□□ -0.09
COL6A3P12111 AC104521.1-201ENST00000598582 279 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A3P12111 AC010531.7-201ENST00000602665 465 ntTSL 3 BASIC14.51□□□□□ -0.09
COL6A3P12111 AC064862.6-203ENST00000605139 691 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A3P12111 FURIN-208ENST00000640725 224 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A3P12111 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A3P12111 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A3P12111 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 AC015818.1-201ENST00000451011 244 ntBASIC14.5□□□□□ -0.09
COL6A3P12111 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
COL6A3P12111 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.5□□□□□ -0.09
COL6A3P12111 ZNF551-202ENST00000596085 469 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC14.5□□□□□ -0.09
COL6A3P12111 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms