Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 SLED1-202ENST00000512051 380 ntBASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 AC091812.2-201ENST00000619081 385 ntBASIC11.01□□□□□ -0.65
HLA-DQA1P01909 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DQA1P01909 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC11□□□□□ -0.65
HLA-DQA1P01909 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 MIR574-201ENST00000385209 96 ntBASIC11□□□□□ -0.65
HLA-DQA1P01909 NMU-202ENST00000505262 693 ntTSL 3 BASIC11□□□□□ -0.65
HLA-DQA1P01909 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 AC092364.2-202ENST00000597012 1073 ntBASIC11□□□□□ -0.65
HLA-DQA1P01909 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DQA1P01909 ZNF740-201ENST00000416904 8578 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DQA1P01909 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DQA1P01909 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DQA1P01909 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 AC008620.2-201ENST00000510294 1569 ntBASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MARK2P9-201ENST00000430958 1727 ntBASIC10.99□□□□□ -0.65
HLA-DQA1P01909 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms