Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CLDN9O95484 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 AC010141.1-201ENST00000411585 623 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 CHMP1AP1-201ENST00000445563 662 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 TMEM198B-204ENST00000484016 896 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.1□□□□□ -0.15
CLDN9O95484 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 PPY2P-201ENST00000582808 702 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 AC104506.1-201ENST00000609247 429 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN9O95484 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CLDN9O95484 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN9O95484 SHC1P1-201ENST00000425230 1745 ntBASIC14.1□□□□□ -0.15
CLDN9O95484 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
CLDN9O95484 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN9O95484 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN9O95484 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN9O95484 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN9O95484 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN9O95484 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN9O95484 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 AP000812.2-201ENST00000538934 718 ntBASIC14.09□□□□□ -0.15
CLDN9O95484 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.09□□□□□ -0.15
CLDN9O95484 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN9O95484 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN9O95484 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN9O95484 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLDN9O95484 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 MBLAC2-202ENST00000514906 1936 ntBASIC14.09□□□□□ -0.15
CLDN9O95484 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms