Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.71□□□□□ -0.21
LDB3O75112 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.71□□□□□ -0.21
LDB3O75112 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LDB3O75112 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LDB3O75112 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LDB3O75112 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.71□□□□□ -0.21
LDB3O75112 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.71□□□□□ -0.21
LDB3O75112 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LDB3O75112 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LDB3O75112 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.71□□□□□ -0.22
LDB3O75112 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LDB3O75112 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LDB3O75112 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LDB3O75112 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LDB3O75112 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
LDB3O75112 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LDB3O75112 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.71□□□□□ -0.22
LDB3O75112 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LDB3O75112 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 AC004899.1-201ENST00000424687 1714 ntBASIC13.7□□□□□ -0.22
LDB3O75112 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
LDB3O75112 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.7□□□□□ -0.22
LDB3O75112 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LDB3O75112 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 AC144522.1-201ENST00000625111 1658 ntBASIC13.7□□□□□ -0.22
LDB3O75112 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LDB3O75112 AC152010.1-201ENST00000415779 2006 ntBASIC13.7□□□□□ -0.22
LDB3O75112 RPL18P13-201ENST00000478088 569 ntBASIC13.7□□□□□ -0.22
LDB3O75112 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.7□□□□□ -0.22
LDB3O75112 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 AL160314.3-201ENST00000556041 767 ntBASIC13.7□□□□□ -0.22
LDB3O75112 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.7□□□□□ -0.22
LDB3O75112 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.7□□□□□ -0.22
LDB3O75112 AL023803.2-201ENST00000620080 638 ntBASIC13.7□□□□□ -0.22
LDB3O75112 AL008638.5-201ENST00000623814 1298 ntBASIC13.7□□□□□ -0.22
LDB3O75112 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.7□□□□□ -0.22
LDB3O75112 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.7□□□□□ -0.22
LDB3O75112 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.7□□□□□ -0.22
LDB3O75112 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
LDB3O75112 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.7□□□□□ -0.22
LDB3O75112 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LDB3O75112 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
LDB3O75112 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
LDB3O75112 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.69□□□□□ -0.22
LDB3O75112 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 HSPA8P5-201ENST00000456928 2069 ntBASIC13.69□□□□□ -0.22
LDB3O75112 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.69□□□□□ -0.22
LDB3O75112 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.69□□□□□ -0.22
LDB3O75112 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.69□□□□□ -0.22
LDB3O75112 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.69□□□□□ -0.22
LDB3O75112 AC005586.2-201ENST00000563946 837 ntBASIC13.69□□□□□ -0.22
LDB3O75112 AC005324.6-201ENST00000587972 613 ntBASIC13.69□□□□□ -0.22
LDB3O75112 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 AC008805.1-201ENST00000590892 364 ntBASIC13.69□□□□□ -0.22
LDB3O75112 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
LDB3O75112 BNIP3P13-201ENST00000599968 566 ntBASIC13.69□□□□□ -0.22
LDB3O75112 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LDB3O75112 AC022748.3-201ENST00000621828 275 ntBASIC13.69□□□□□ -0.22
LDB3O75112 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms