Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ACTG1P19-201ENST00000418987 1116 ntBASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC018638.5-201ENST00000450885 754 ntBASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 PTGER4P2-201ENST00000328411 252 ntBASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 PTGER4P3-201ENST00000458150 252 ntBASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHROOM4Q9ULL8 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 MIR566-201ENST00000385187 94 ntBASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 AC023906.1-201ENST00000486386 453 ntBASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 OR5BD1P-201ENST00000532527 817 ntBASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 AC226150.1-201ENST00000544259 466 ntBASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 MT2A-202ENST00000561491 581 ntTSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHROOM4Q9ULL8 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 GPI-205ENST00000586425 1799 ntTSL 5 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 OR8T1P-201ENST00000421347 918 ntBASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 IGHEP1-201ENST00000521393 651 ntBASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 APOC1-209ENST00000592885 562 ntTSL 3 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 AL118522.1-201ENST00000611368 560 ntBASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SHROOM4Q9ULL8 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC27.21■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms