Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 CDKN2A-AS1-201ENST00000441769 823 ntBASIC13.94□□□□□ -0.18
VPS13AQ96RL7 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 MST1L-204ENST00000545160 559 ntTSL 4 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 AP005264.5-201ENST00000590066 467 ntBASIC13.94□□□□□ -0.18
VPS13AQ96RL7 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 CRIP1P2-201ENST00000425396 228 ntBASIC13.94□□□□□ -0.18
VPS13AQ96RL7 RN7SL524P-201ENST00000581152 300 ntBASIC13.94□□□□□ -0.18
VPS13AQ96RL7 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC13.94□□□□□ -0.18
VPS13AQ96RL7 AC079331.1-201ENST00000623200 1200 ntBASIC13.94□□□□□ -0.18
VPS13AQ96RL7 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13AQ96RL7 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 FAM86JP-202ENST00000484500 988 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 AC004801.1-201ENST00000549557 360 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 TYMSP2-201ENST00000589501 424 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 AC106785.2-201ENST00000564385 1319 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 LAP3P2-201ENST00000454686 1454 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 RPL3P2-204ENST00000413027 1203 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 AC009041.4-201ENST00000620075 638 ntBASIC13.93□□□□□ -0.18
VPS13AQ96RL7 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VPS13AQ96RL7 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms