Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DQX1-201ENST00000393951 2540 ntAPPRIS P1 TSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC093525.7-201ENST00000569852 3626 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 PDGFD-201ENST00000302251 4052 ntAPPRIS P3 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CAT-201ENST00000241052 2302 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 PRKAB1-206ENST00000541640 2303 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC091178.1-201ENST00000583447 2305 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC010422.6-201ENST00000593682 5857 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ZNF341-201ENST00000342427 3661 ntAPPRIS P3 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 DNAJC9-201ENST00000372950 3032 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AIF1L-204ENST00000372300 3284 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CRHR1-206ENST00000398285 2399 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 FAM8A6P-201ENST00000407496 1135 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 DUSP5P1-201ENST00000441325 1139 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CCDC74BP1-201ENST00000508880 1123 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 PAM16-215ENST00000577031 548 ntTSL 4 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC005336.2-201ENST00000593183 939 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AP001412.1-201ENST00000608405 714 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC012676.5-201ENST00000624337 1955 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 P2RX1-201ENST00000225538 2697 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ABCC4-207ENST00000629385 2903 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ARHGEF11-201ENST00000361409 5788 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ZZEF1-201ENST00000381638 11456 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AL592528.1-201ENST00000380008 3466 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CLK3-201ENST00000345005 1846 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 TSPEAR-204ENST00000614657 4027 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AC080128.2-201ENST00000641520 11863 ntBASIC8.98□□□□□ -0.97
LINC00643Q86TS7 HIF3A-204ENST00000300862 2551 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 MAGEA11-202ENST00000355220 1864 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 LINC02133-202ENST00000569726 2626 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 NWD1-206ENST00000552788 6964 ntAPPRIS P5 TSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 TMEM169-202ENST00000406027 3174 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 CPT1C-203ENST00000392518 2910 ntAPPRIS P3 TSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ERCC1-202ENST00000300853 3828 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 MEG3-214ENST00000519709 1726 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 GSN-205ENST00000373823 3341 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 TUT1-202ENST00000308436 2826 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CHIAP2-201ENST00000369743 2829 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 RIMS2-207ENST00000504942 4228 ntAPPRIS P1 TSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 PDK1-201ENST00000282077 14193 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ADCY1-201ENST00000297323 12503 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 SLC6A7-201ENST00000230671 3739 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 POU2F2-201ENST00000342301 3730 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ZSCAN31-201ENST00000344279 2619 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 CTCFL-217ENST00000608425 2915 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 TRAF3-201ENST00000347662 7700 ntTSL 5 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 PPARD-205ENST00000448077 3516 ntTSL 2 BASIC8.97□□□□□ -0.97
LINC00643Q86TS7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms