RNA–Protein interactions for RNA: ENST00000302251.9

PDGFD-201, Transcript of platelet derived growth factor D, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDGFD, Length 4,052 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFD-201ENST00000302251 NISCHQ9Y2I1 1504 aa23■■□□□ 1.27
PDGFD-201ENST00000302251 SUPT5HO00267 1087 aaKnown RBP20.57■□□□□ 0.88
PDGFD-201ENST00000302251 DCAF8L2P0C7V8 631 aa20.47■□□□□ 0.87
PDGFD-201ENST00000302251 SHROOM4Q9ULL8 1493 aa20.36■□□□□ 0.85
PDGFD-201ENST00000302251 PCGF6Q9BYE7 350 aa19.96■□□□□ 0.79
PDGFD-201ENST00000302251 CCDC180Q9P1Z9 1646 aa19.77■□□□□ 0.75
PDGFD-201ENST00000302251 EHMT2Q96KQ7 1210 aa19.73■□□□□ 0.75
PDGFD-201ENST00000302251 ZCCHC6Q5VYS8 1495 aaKnown RBP19.54■□□□□ 0.72
PDGFD-201ENST00000302251 HRCP23327 699 aa19.46■□□□□ 0.7
PDGFD-201ENST00000302251 PPARGC1BQ86YN6 1023 aaKnown RBP19.44■□□□□ 0.7
PDGFD-201ENST00000302251 FAM9AQ8IZU1 332 aaPredicted RBP19.31■□□□□ 0.68
PDGFD-201ENST00000302251 LOC105371045A0A1W2PR82 267 aa19.12■□□□□ 0.65
PDGFD-201ENST00000302251 TTBK1Q5TCY1 1321 aaPredicted RBP19.11■□□□□ 0.65
PDGFD-201ENST00000302251 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
PDGFD-201ENST00000302251 DCAF1Q9Y4B6 1507 aa19■□□□□ 0.63
PDGFD-201ENST00000302251 PELP1Q8IZL8 1130 aaKnown RBP18.97■□□□□ 0.63
PDGFD-201ENST00000302251 MYO15BQ96JP2 1530 aa18.88■□□□□ 0.61
PDGFD-201ENST00000302251 TRIM26Q12899 539 aaPredicted RBP18.88■□□□□ 0.61
PDGFD-201ENST00000302251 ZEB1P37275 1124 aaPredicted RBP18.87■□□□□ 0.61
PDGFD-201ENST00000302251 CCER1Q8TC90 406 aaPredicted RBP18.84■□□□□ 0.61
PDGFD-201ENST00000302251 TRIM41Q8WV44 630 aa18.8■□□□□ 0.6
PDGFD-201ENST00000302251 CENPBP07199 599 aaPredicted RBP18.74■□□□□ 0.59
PDGFD-201ENST00000302251 YTHDC1Q96MU7 727 aaKnown RBP18.74■□□□□ 0.59
PDGFD-201ENST00000302251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.49■□□□□ 0.55
PDGFD-201ENST00000302251 ABCC9O60706 1549 aa18.49■□□□□ 0.55
PDGFD-201ENST00000302251 RANGAP1P46060 587 aaPredicted RBP18.46■□□□□ 0.55
PDGFD-201ENST00000302251 APLP2Q06481 763 aa18.35■□□□□ 0.53
PDGFD-201ENST00000302251 GTF3C3Q9Y5Q9 886 aa18.35■□□□□ 0.53
PDGFD-201ENST00000302251 DIEXFQ68CQ4 756 aaKnown RBP18.31■□□□□ 0.52
PDGFD-201ENST00000302251 MYT1Q01538 1121 aa18.3■□□□□ 0.52
PDGFD-201ENST00000302251 UBTFP17480 764 aaKnown RBP18.28■□□□□ 0.52
PDGFD-201ENST00000302251 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.52
PDGFD-201ENST00000302251 SCRIBQ14160 1630 aa18.26■□□□□ 0.51
PDGFD-201ENST00000302251 ACIN1Q9UKV3 1341 aaKnown RBP18.15■□□□□ 0.5
PDGFD-201ENST00000302251 HNRNPUL2Q1KMD3 747 aaKnown RBP18.13■□□□□ 0.49
PDGFD-201ENST00000302251 RSF1Q96T23 1441 aaPredicted RBP18.12■□□□□ 0.49
PDGFD-201ENST00000302251 RB1CC1Q8TDY2 1594 aa18.09■□□□□ 0.49
PDGFD-201ENST00000302251 NEUROD1Q13562 356 aa18.08■□□□□ 0.49
PDGFD-201ENST00000302251 UNC13AQ9UPW8 1703 aa18.06■□□□□ 0.48
PDGFD-201ENST00000302251 NACADO15069 1562 aa18.03■□□□□ 0.48
PDGFD-201ENST00000302251 EIF4G1Q04637 1599 aaKnown RBP18■□□□□ 0.47
PDGFD-201ENST00000302251 CECR2Q9BXF3 1484 aa17.93■□□□□ 0.46
PDGFD-201ENST00000302251 MROH2BQ7Z745 1585 aa17.92■□□□□ 0.46
PDGFD-201ENST00000302251 WIZO95785 1651 aa17.91■□□□□ 0.46
PDGFD-201ENST00000302251 ERICH6Q7L0X2 663 aa17.9■□□□□ 0.46
PDGFD-201ENST00000302251 ITGAEP38570 1179 aa17.87■□□□□ 0.45
PDGFD-201ENST00000302251 NEFLP07196 543 aa17.82■□□□□ 0.44
PDGFD-201ENST00000302251 ZNF316A6NFI3 1004 aaPredicted RBP17.8■□□□□ 0.44
PDGFD-201ENST00000302251 BCANQ96GW7 911 aa17.8■□□□□ 0.44
PDGFD-201ENST00000302251 ATP1B4Q9UN42 357 aaPredicted RBP17.8■□□□□ 0.44
PDGFD-201ENST00000302251 BAZ1AQ9NRL2 1556 aaPredicted RBP17.77■□□□□ 0.44
PDGFD-201ENST00000302251 MIER1Q8N108 512 aa17.61■□□□□ 0.41
PDGFD-201ENST00000302251 BICRAQ9NZM4 1560 aa17.6■□□□□ 0.41
PDGFD-201ENST00000302251 SMARCA4P51532 1647 aa17.6■□□□□ 0.41
PDGFD-201ENST00000302251 CNGB1Q14028 1251 aaPredicted RBP17.52■□□□□ 0.39
PDGFD-201ENST00000302251 SMARCA2P51531 1590 aa17.51■□□□□ 0.39
PDGFD-201ENST00000302251 TOP2AP11388 1531 aaKnown RBP17.5■□□□□ 0.39
PDGFD-201ENST00000302251 PEG3Q9GZU2 1588 aa17.43■□□□□ 0.38
PDGFD-201ENST00000302251 PABPN1Q86U42 306 aaKnown RBP eCLIP17.4■□□□□ 0.38
PDGFD-201ENST00000302251 CSRNP3Q8WYN3 585 aa17.39■□□□□ 0.37
PDGFD-201ENST00000302251 CCDC88BA6NC98 1476 aa17.36■□□□□ 0.37
PDGFD-201ENST00000302251 ABCC8Q09428 1581 aa17.36■□□□□ 0.37
PDGFD-201ENST00000302251 FKBP8Q14318 412 aa17.34■□□□□ 0.37
PDGFD-201ENST00000302251 POLR3GLQ9BT43 218 aa17.31■□□□□ 0.36
PDGFD-201ENST00000302251 FAM50AQ14320 339 aaKnown RBP17.26■□□□□ 0.35
PDGFD-201ENST00000302251 DDX10Q13206 875 aaKnown RBP17.21■□□□□ 0.35
PDGFD-201ENST00000302251 TRIM52Q96A61 297 aa17.2■□□□□ 0.34
PDGFD-201ENST00000302251 HIRIP3Q9BW71 556 aaPredicted RBP17.17■□□□□ 0.34
PDGFD-201ENST00000302251 ANP32CO43423 234 aa17.16■□□□□ 0.34
PDGFD-201ENST00000302251 WRNQ14191 1432 aaPredicted RBP eCLIP17.16■□□□□ 0.34
PDGFD-201ENST00000302251 RUSC2Q8N2Y8 1516 aa17.15■□□□□ 0.34
PDGFD-201ENST00000302251 CDK11AQ9UQ88 783 aaPredicted RBP17.14■□□□□ 0.33
PDGFD-201ENST00000302251 SOGA1O94964 1423 aa17.13■□□□□ 0.33
PDGFD-201ENST00000302251 SYNJ1O43426 1573 aa17.11■□□□□ 0.33
PDGFD-201ENST00000302251 CEP162Q5TB80 1403 aa17.11■□□□□ 0.33
PDGFD-201ENST00000302251 SUPT16HQ9Y5B9 1047 aaKnown RBP17.1■□□□□ 0.33
PDGFD-201ENST00000302251 IRX6P78412 446 aaPredicted RBP17.09■□□□□ 0.33
PDGFD-201ENST00000302251 ANP32EQ9BTT0 268 aa17.08■□□□□ 0.33
PDGFD-201ENST00000302251 RTL5Q5HYW3 569 aaPredicted RBP17.04■□□□□ 0.32
PDGFD-201ENST00000302251 P3H3Q8IVL6 736 aa17.02■□□□□ 0.31
PDGFD-201ENST00000302251 ATAD2BQ9ULI0 1458 aa17■□□□□ 0.31
PDGFD-201ENST00000302251 CLSPNQ9HAW4 1339 aa16.99■□□□□ 0.31
PDGFD-201ENST00000302251 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
PDGFD-201ENST00000302251 TNIKQ9UKE5 1360 aa16.95■□□□□ 0.3
PDGFD-201ENST00000302251 KIF21BO75037 1637 aa16.94■□□□□ 0.3
PDGFD-201ENST00000302251 BIVM-ERCC5R4GMW8 1640 aa16.94■□□□□ 0.3
PDGFD-201ENST00000302251 BCL11AQ9H165 835 aa16.94■□□□□ 0.3
PDGFD-201ENST00000302251 NBR1Q14596 966 aa16.93■□□□□ 0.3
PDGFD-201ENST00000302251 DAXXQ9UER7 740 aaPredicted RBP16.92■□□□□ 0.3
PDGFD-201ENST00000302251 CLIP1P30622 1438 aa16.91■□□□□ 0.3
PDGFD-201ENST00000302251 TSHZ2Q9NRE2 1034 aa16.89■□□□□ 0.29
PDGFD-201ENST00000302251 EEA1Q15075 1411 aa16.88■□□□□ 0.29
PDGFD-201ENST00000302251 TOP2BQ02880 1626 aa16.87■□□□□ 0.29
PDGFD-201ENST00000302251 FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
PDGFD-201ENST00000302251 ZNF326Q5BKZ1 582 aaKnown RBP16.85■□□□□ 0.29
PDGFD-201ENST00000302251 NPM2Q86SE8 214 aaKnown RBP16.85■□□□□ 0.29
PDGFD-201ENST00000302251 PRDM2Q13029 1718 aa16.84■□□□□ 0.29
PDGFD-201ENST00000302251 SENP3-EIF4A1A0A087X0R7 540 aa16.84■□□□□ 0.29
PDGFD-201ENST00000302251 KCNH8Q96L42 1107 aa16.82■□□□□ 0.28
PDGFD-201ENST00000302251 GOLGA3Q08378 1498 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms