Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 AP000354.1-201ENST00000396982 456 ntBASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 AC079414.2-201ENST00000567157 1104 ntBASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 FAM187B2P-201ENST00000577135 713 ntBASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 AC048382.6-201ENST00000621980 1223 ntBASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 RPL29P2-202ENST00000498671 657 ntBASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 IGHEP1-201ENST00000521393 651 ntBASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
VPS13DQ5THJ4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 USP39-207ENST00000450066 2086 ntTSL 2 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 NHP2P1-201ENST00000335274 462 ntBASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 OR2W2P-201ENST00000406313 909 ntBASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC9.4□□□□□ -0.91
VPS13DQ5THJ4 PKD1P6-201ENST00000343738 4769 ntBASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AC233724.9-201ENST00000511694 407 ntBASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 BX088651.3-201ENST00000418155 352 ntBASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 CCND3P1-201ENST00000438347 580 ntBASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AC080013.5-201ENST00000607044 679 ntBASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC9.39□□□□□ -0.91
VPS13DQ5THJ4 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms