Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 SHC1P1-201ENST00000425230 1745 ntBASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 AC020910.5-201ENST00000623668 1865 ntBASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC144BQ3MJ40 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AL133499.1-201ENST00000596207 608 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC138696.2-201ENST00000607376 223 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC090164.2-201ENST00000611487 516 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC128714.1-201ENST00000637035 887 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 AC105206.1-202ENST00000314927 2368 ntBASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CCDC144BQ3MJ40 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 AC011840.2-201ENST00000563063 1520 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 CICP8-201ENST00000455800 2813 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 LSS-211ENST00000522411 2523 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 E2F3P2-201ENST00000447755 1422 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 MAGEA5-201ENST00000446757 942 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 RPS2P36-201ENST00000456516 831 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 AL161670.2-201ENST00000557650 1227 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 DUX4L46-201ENST00000566845 751 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 AF254983.2-201ENST00000612331 135 ntBASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CCDC144BQ3MJ40 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms