Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC8.62□□□□□ -1.03
HSPG2P98160 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
HSPG2P98160 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
HSPG2P98160 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HSPG2P98160 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HSPG2P98160 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HSPG2P98160 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HSPG2P98160 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 MIR1249-201ENST00000408671 66 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 Z84721.1-201ENST00000438841 372 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 FAM213AP2-201ENST00000521579 683 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC8.61□□□□□ -1.03
HSPG2P98160 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AC132872.4-202ENST00000622924 2756 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AC112702.1-201ENST00000623712 366 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AL391005.1-201ENST00000623953 2435 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 STK16-202ENST00000409260 1493 ntTSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC8.61□□□□□ -1.03
HSPG2P98160 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 PGK1P2-201ENST00000431702 1214 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 AC253536.1-201ENST00000437021 315 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC8.61□□□□□ -1.03
HSPG2P98160 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC8.61□□□□□ -1.03
HSPG2P98160 RN7SL487P-201ENST00000468140 344 ntBASIC8.61□□□□□ -1.03
HSPG2P98160 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
HSPG2P98160 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC8.61□□□□□ -1.03
HSPG2P98160 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 IGHV1OR15-9-201ENST00000338912 353 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
HSPG2P98160 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC8.61□□□□□ -1.03
HSPG2P98160 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC8.61□□□□□ -1.03
HSPG2P98160 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC8.61□□□□□ -1.03
HSPG2P98160 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HSPG2P98160 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC8.6□□□□□ -1.03
HSPG2P98160 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 RNF7-202ENST00000393000 805 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 RPL29P2-202ENST00000498671 657 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 AC112250.1-201ENST00000504640 745 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC8.6□□□□□ -1.03
HSPG2P98160 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 MED11-203ENST00000575284 652 ntTSL 3 BASIC8.6□□□□□ -1.03
HSPG2P98160 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC8.6□□□□□ -1.03
HSPG2P98160 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC8.6□□□□□ -1.03
HSPG2P98160 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HSPG2P98160 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
HSPG2P98160 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC8.6□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms