Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 AC010141.1-201ENST00000411585 623 ntBASIC15.19■□□□□ 0.02
CDH6P55285 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 ACA64.2-201ENST00000459014 129 ntBASIC15.19■□□□□ 0.02
CDH6P55285 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CDH6P55285 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH6P55285 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH6P55285 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 MIR326-201ENST00000362220 95 ntBASIC15.18■□□□□ 0.02
CDH6P55285 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.18■□□□□ 0.02
CDH6P55285 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 AC104989.1-201ENST00000519711 778 ntBASIC15.18■□□□□ 0.02
CDH6P55285 AC023310.1-201ENST00000554836 735 ntBASIC15.18■□□□□ 0.02
CDH6P55285 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
CDH6P55285 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH6P55285 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH6P55285 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH6P55285 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
CDH6P55285 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms