Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.83□□□□□ -0.2
CLK1P49759 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLK1P49759 AC138761.1-201ENST00000584393 385 ntBASIC13.83□□□□□ -0.2
CLK1P49759 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
CLK1P49759 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLK1P49759 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.83□□□□□ -0.2
CLK1P49759 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 CSPG4P11-201ENST00000560634 4910 ntBASIC13.83□□□□□ -0.2
CLK1P49759 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLK1P49759 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.83□□□□□ -0.2
CLK1P49759 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLK1P49759 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.82□□□□□ -0.2
CLK1P49759 REXO1L1P-201ENST00000379010 6598 ntBASIC13.82□□□□□ -0.2
CLK1P49759 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLK1P49759 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLK1P49759 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.82□□□□□ -0.2
CLK1P49759 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.82□□□□□ -0.2
CLK1P49759 AC098850.1-201ENST00000419919 790 ntBASIC13.82□□□□□ -0.2
CLK1P49759 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.82□□□□□ -0.2
CLK1P49759 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.82□□□□□ -0.2
CLK1P49759 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 AL359711.2-201ENST00000563105 872 ntBASIC13.82□□□□□ -0.2
CLK1P49759 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 AC008494.3-201ENST00000606615 944 ntBASIC13.82□□□□□ -0.2
CLK1P49759 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 AL603764.1-201ENST00000636452 321 ntBASIC13.82□□□□□ -0.2
CLK1P49759 AL358472.5-202ENST00000641448 1267 ntBASIC13.82□□□□□ -0.2
CLK1P49759 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
CLK1P49759 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.82□□□□□ -0.2
CLK1P49759 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLK1P49759 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLK1P49759 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.81□□□□□ -0.2
CLK1P49759 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.81□□□□□ -0.2
CLK1P49759 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLK1P49759 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.81□□□□□ -0.2
CLK1P49759 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLK1P49759 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms