Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12□□□□□ -0.49
NKX2-1P43699 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 AC004461.1-201ENST00000412461 403 ntBASIC12□□□□□ -0.49
NKX2-1P43699 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12□□□□□ -0.49
NKX2-1P43699 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12□□□□□ -0.49
NKX2-1P43699 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 AC010336.2-201ENST00000564226 506 ntBASIC12□□□□□ -0.49
NKX2-1P43699 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12□□□□□ -0.49
NKX2-1P43699 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12□□□□□ -0.49
NKX2-1P43699 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
NKX2-1P43699 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 OR2I1P-208ENST00000641137 4948 ntBASIC12□□□□□ -0.49
NKX2-1P43699 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC12□□□□□ -0.49
NKX2-1P43699 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12□□□□□ -0.49
NKX2-1P43699 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
NKX2-1P43699 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 NCLP1-201ENST00000445357 1963 ntBASIC11.99□□□□□ -0.49
NKX2-1P43699 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.99□□□□□ -0.49
NKX2-1P43699 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC11.99□□□□□ -0.49
NKX2-1P43699 AC254562.1-201ENST00000417586 456 ntBASIC11.99□□□□□ -0.49
NKX2-1P43699 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC11.99□□□□□ -0.49
NKX2-1P43699 HLA-V-204ENST00000476601 1289 ntBASIC11.99□□□□□ -0.49
NKX2-1P43699 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 DHDH-204ENST00000523250 634 ntTSL 5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 DUX4L47-201ENST00000566374 394 ntBASIC11.99□□□□□ -0.49
NKX2-1P43699 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC11.99□□□□□ -0.49
NKX2-1P43699 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC11.99□□□□□ -0.49
NKX2-1P43699 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC11.99□□□□□ -0.49
NKX2-1P43699 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms