Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL5A1P20908 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.59□□□□□ -0.23
COL5A1P20908 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 OR7E115P-201ENST00000382617 1024 ntBASIC13.59□□□□□ -0.23
COL5A1P20908 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 AP000244.1-201ENST00000424582 201 ntBASIC13.59□□□□□ -0.23
COL5A1P20908 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC13.59□□□□□ -0.23
COL5A1P20908 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC13.59□□□□□ -0.23
COL5A1P20908 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC13.59□□□□□ -0.23
COL5A1P20908 GDNF-207ENST00000515058 764 ntTSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 MIR4265-201ENST00000582152 99 ntBASIC13.59□□□□□ -0.23
COL5A1P20908 AC005777.1-201ENST00000588332 187 ntBASIC13.59□□□□□ -0.23
COL5A1P20908 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC13.59□□□□□ -0.23
COL5A1P20908 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL5A1P20908 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL5A1P20908 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL5A1P20908 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
COL5A1P20908 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL5A1P20908 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL5A1P20908 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
COL5A1P20908 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL5A1P20908 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
COL5A1P20908 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 AC106827.1-201ENST00000366454 431 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 AL357373.1-201ENST00000394974 322 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 HNRNPA1P58-201ENST00000403629 610 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL5A1P20908 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 NRADDP-201ENST00000437305 691 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 GALP-202ENST00000440823 889 ntTSL 5 BASIC13.58□□□□□ -0.24
COL5A1P20908 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.58□□□□□ -0.24
COL5A1P20908 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC13.58□□□□□ -0.24
COL5A1P20908 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.58□□□□□ -0.24
COL5A1P20908 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.58□□□□□ -0.24
COL5A1P20908 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.58□□□□□ -0.24
COL5A1P20908 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 AC138761.6-201ENST00000583997 1423 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 AC004554.1-201ENST00000422830 1468 ntBASIC13.58□□□□□ -0.24
COL5A1P20908 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.58□□□□□ -0.24
COL5A1P20908 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
COL5A1P20908 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL5A1P20908 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 RN7SL832P-201ENST00000607781 1756 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL5A1P20908 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL5A1P20908 ACTBP14-201ENST00000411655 1089 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 ASS1P2-201ENST00000439895 1223 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC13.57□□□□□ -0.24
COL5A1P20908 IGHEP2-201ENST00000519308 1256 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 AL512310.5-201ENST00000551999 515 ntBASIC13.57□□□□□ -0.24
COL5A1P20908 BATF-202ENST00000555504 361 ntTSL 2 BASIC13.57□□□□□ -0.24
COL5A1P20908 FTLP5-201ENST00000586853 534 ntBASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms