Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 KLK8-203ENST00000347619 555 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A3P12111 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 EEF1GP1-201ENST00000457231 1299 ntBASIC14.55□□□□□ -0.08
COL6A3P12111 PIMREG-209ENST00000576056 833 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL6A3P12111 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 AC112250.1-201ENST00000504640 745 ntBASIC14.54□□□□□ -0.08
COL6A3P12111 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A3P12111 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL6A3P12111 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A3P12111 AC105424.1-201ENST00000514583 209 ntBASIC14.54□□□□□ -0.08
COL6A3P12111 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC14.54□□□□□ -0.08
COL6A3P12111 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 NR1I2-207ENST00000640105 1305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
COL6A3P12111 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 AC008620.2-201ENST00000510294 1569 ntBASIC14.54□□□□□ -0.08
COL6A3P12111 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A3P12111 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A3P12111 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A3P12111 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC14.54□□□□□ -0.08
COL6A3P12111 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC14.54□□□□□ -0.08
COL6A3P12111 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC14.54□□□□□ -0.08
COL6A3P12111 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A3P12111 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 LAP3P2-201ENST00000454686 1454 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 AC064801.2-201ENST00000625052 1303 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL6A3P12111 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AP003306.2-201ENST00000400902 485 ntTSL 4 BASIC14.53□□□□□ -0.08
COL6A3P12111 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC131097.4-201ENST00000442867 571 ntTSL 4 BASIC14.53□□□□□ -0.08
COL6A3P12111 HLA-DRB9-201ENST00000449413 343 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 RN7SL111P-201ENST00000468841 285 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC103810.4-201ENST00000578601 257 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 AC009061.2-204ENST00000602476 524 ntTSL 3 BASIC14.53□□□□□ -0.08
COL6A3P12111 PUDPP2-202ENST00000628080 737 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A3P12111 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A3P12111 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A3P12111 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 KIR2DL1-201ENST00000291633 1203 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC106017.1-201ENST00000428348 440 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC007952.3-201ENST00000442355 440 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC016304.1-201ENST00000476363 413 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 AC007952.8-202ENST00000495691 440 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC020893.2-201ENST00000506083 723 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 PTS-204ENST00000525803 625 ntTSL 3 BASIC14.53□□□□□ -0.08
COL6A3P12111 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC14.53□□□□□ -0.08
COL6A3P12111 AC136475.9-201ENST00000605240 497 ntBASIC14.53□□□□□ -0.08
COL6A3P12111 AC123595.2-201ENST00000607854 549 ntTSL 4 BASIC14.53□□□□□ -0.08
COL6A3P12111 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A3P12111 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A3P12111 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms