Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 AC008620.2-201ENST00000510294 1569 ntBASIC19.81■□□□□ 0.76
NPHP4O75161 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP4O75161 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP4O75161 OR52V1P-201ENST00000515557 898 ntBASIC19.81■□□□□ 0.76
NPHP4O75161 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP4O75161 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP4O75161 EMP3-204ENST00000596315 761 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP4O75161 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP4O75161 Z82244.2-201ENST00000632196 448 ntBASIC19.81■□□□□ 0.76
NPHP4O75161 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
NPHP4O75161 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
NPHP4O75161 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
NPHP4O75161 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 AC064850.1-201ENST00000413279 1398 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
NPHP4O75161 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP4O75161 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 RPL4P6-201ENST00000438116 1304 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP4O75161 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 CFL1P6-201ENST00000400899 494 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC19.8■□□□□ 0.76
NPHP4O75161 HNRNPA3P12-201ENST00000437410 1063 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 GYG1-209ENST00000483267 801 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP4O75161 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC19.8■□□□□ 0.76
NPHP4O75161 RNA5SP420-201ENST00000516997 137 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC19.8■□□□□ 0.76
NPHP4O75161 MST1L-204ENST00000545160 559 ntTSL 4 BASIC19.8■□□□□ 0.76
NPHP4O75161 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC19.8■□□□□ 0.76
NPHP4O75161 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP4O75161 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 TMBIM7P-203ENST00000641617 1718 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP4O75161 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP4O75161 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP4O75161 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
NPHP4O75161 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP4O75161 Z98885.3-201ENST00000624882 1757 ntBASIC19.8■□□□□ 0.76
NPHP4O75161 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
NPHP4O75161 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP4O75161 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 MPV17-209ENST00000405983 859 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 DNM1P46-202ENST00000415963 882 ntBASIC19.79■□□□□ 0.76
NPHP4O75161 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP4O75161 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 AC233724.9-201ENST00000511694 407 ntBASIC19.79■□□□□ 0.76
NPHP4O75161 TPST2P1-201ENST00000564073 1102 ntBASIC19.79■□□□□ 0.76
NPHP4O75161 CCND3P2-201ENST00000579393 537 ntBASIC19.79■□□□□ 0.76
NPHP4O75161 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP4O75161 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC19.79■□□□□ 0.76
NPHP4O75161 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP4O75161 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 DUT-208ENST00000559540 1441 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
NPHP4O75161 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms