Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DRB4X5D2U9 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DRB4X5D2U9 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DRB4X5D2U9 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DRB4X5D2U9 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AL031595.1-201ENST00000623969 4709 ntBASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC016694.1-201ENST00000434179 700 ntBASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 TPT1P11-201ENST00000458482 498 ntBASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 RNA5SP486-201ENST00000515961 83 ntBASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC131206.1-201ENST00000538078 1211 ntBASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PFAS-212ENST00000625942 396 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 FKBP4P6-201ENST00000457486 1332 ntBASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DRB4X5D2U9 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 AL136172.1-201ENST00000598590 1394 ntBASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DRB4X5D2U9 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms