Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AC131212.3-201ENST00000624087 4219 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 HSPA8P5-201ENST00000456928 2069 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 MXI1-205ENST00000393134 889 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AC007551.1-201ENST00000457394 519 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 FTH1P14-201ENST00000482930 551 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 SORD2P-201ENST00000558556 1069 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
FOXA2Q9Y261 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
FOXA2Q9Y261 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
FOXA2Q9Y261 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.83□□□□□ -0.51
FOXA2Q9Y261 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PEG13-201ENST00000631594 5667 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 AC089987.1-201ENST00000551654 2209 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 AC090643.2-201ENST00000623442 2029 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MESTP3-201ENST00000503460 968 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 ALG3P1-201ENST00000508806 1114 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 GNRHR2-203ENST00000581100 1187 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 BX088702.1-201ENST00000610784 235 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms