Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 AC015818.8-201ENST00000587907 1519 ntBASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 AL161932.2-201ENST00000435436 679 ntBASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 RNA5SP412-201ENST00000516234 123 ntBASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 AC100827.2-201ENST00000563214 1194 ntBASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 AL008718.2-201ENST00000609206 1313 ntBASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
AP4E1Q9UPM8 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 MTX1P1-201ENST00000440904 838 ntBASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 Z93015.1-201ENST00000451718 390 ntBASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms