Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AL358472.3-201ENST00000608147 415 ntBASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 DGCR9-201ENST00000609630 2415 ntBASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIMA1Q9UHB6 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AC107918.4-201ENST00000641966 3141 ntBASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AC099521.3-201ENST00000624251 2938 ntBASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AL928654.5-201ENST00000624831 2501 ntBASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 CD8B2-202ENST00000417670 633 ntBASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 MARK2P9-201ENST00000430958 1727 ntBASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 AC027612.1-201ENST00000445234 2395 ntBASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.9■□□□□ 0.14
LIMA1Q9UHB6 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
LIMA1Q9UHB6 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AC135782.3-201ENST00000562782 2105 ntBASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 STK3-218ENST00000617590 2485 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AC005229.1-201ENST00000392885 409 ntBASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AC092933.1-201ENST00000393644 945 ntBASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 AL355864.2-201ENST00000447420 863 ntBASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMA1Q9UHB6 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms