Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AL008638.5-201ENST00000623814 1298 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AC126335.2-201ENST00000623362 4637 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 E2F3P2-201ENST00000447755 1422 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CHMP4CQ96CF2 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CHMP4CQ96CF2 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CHMP4CQ96CF2 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CHMP4CQ96CF2 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AC020907.1-201ENST00000616460 1350 ntBASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 RNMTL1P1-201ENST00000454103 560 ntBASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 BX088702.1-201ENST00000610784 235 ntBASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AC002472.3-201ENST00000640124 621 ntBASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP4CQ96CF2 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AC152010.1-201ENST00000415779 2006 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 RN7SKP175-201ENST00000408472 289 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 GPAA1P2-201ENST00000417923 928 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 HSPB1P2-201ENST00000448722 546 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 GCOM2-201ENST00000509133 1104 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms