Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.09□□□□□ -0.31
CLRN1P58418 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 AC073413.1-201ENST00000603927 732 ntBASIC13.09□□□□□ -0.31
CLRN1P58418 ZACNP1-201ENST00000612259 710 ntBASIC13.09□□□□□ -0.31
CLRN1P58418 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CLRN1P58418 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.09□□□□□ -0.31
CLRN1P58418 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.09□□□□□ -0.31
CLRN1P58418 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.08□□□□□ -0.31
CLRN1P58418 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
CLRN1P58418 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CLRN1P58418 PDIA3P1-201ENST00000471856 1510 ntBASIC13.08□□□□□ -0.31
CLRN1P58418 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CLRN1P58418 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CLRN1P58418 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CLRN1P58418 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.31
CLRN1P58418 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CLRN1P58418 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.08□□□□□ -0.31
CLRN1P58418 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
CLRN1P58418 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
CLRN1P58418 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.08□□□□□ -0.32
CLRN1P58418 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.08□□□□□ -0.32
CLRN1P58418 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.08□□□□□ -0.32
CLRN1P58418 AL355994.2-201ENST00000447882 704 ntBASIC13.08□□□□□ -0.32
CLRN1P58418 KLF2P4-201ENST00000451959 1225 ntBASIC13.08□□□□□ -0.32
CLRN1P58418 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.08□□□□□ -0.32
CLRN1P58418 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.08□□□□□ -0.32
CLRN1P58418 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.08□□□□□ -0.32
CLRN1P58418 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.08□□□□□ -0.32
CLRN1P58418 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CLRN1P58418 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CLRN1P58418 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CLRN1P58418 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms