Protein–RNA interactions for Protein: P48729

CSNK1A1, Casein kinase I isoform alpha, humanhuman

Predictions only

Length 337 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1A1P48729 LINC01230-201ENST00000625222 3017 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 SHC1P1-201ENST00000425230 1745 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 YBX1P6-201ENST00000442962 1002 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 CICP12-201ENST00000455801 843 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AP005482.1-201ENST00000563722 1273 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AC017083.2-201ENST00000608069 979 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 MIR6775-201ENST00000617557 69 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 KRT8P28-201ENST00000433288 1390 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AC152010.1-201ENST00000415779 2006 ntBASIC13.03□□□□□ -0.32
CSNK1A1P48729 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.03□□□□□ -0.32
CSNK1A1P48729 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CSNK1A1P48729 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
CSNK1A1P48729 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CSNK1A1P48729 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.32
CSNK1A1P48729 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.02□□□□□ -0.32
CSNK1A1P48729 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
CSNK1A1P48729 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 MIR326-201ENST00000362220 95 ntBASIC13.02□□□□□ -0.33
CSNK1A1P48729 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 AC010141.1-201ENST00000411585 623 ntBASIC13.02□□□□□ -0.33
CSNK1A1P48729 HLA-V-201ENST00000429037 534 ntBASIC13.02□□□□□ -0.33
CSNK1A1P48729 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 SORD2P-201ENST00000558556 1069 ntBASIC13.02□□□□□ -0.33
CSNK1A1P48729 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 MIR6805-201ENST00000615055 62 ntBASIC13.02□□□□□ -0.33
CSNK1A1P48729 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CSNK1A1P48729 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CSNK1A1P48729 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms