Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.78■□□□□ 0.12
HTTP42858 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.77■□□□□ 0.12
HTTP42858 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.77■□□□□ 0.12
HTTP42858 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC15.77■□□□□ 0.12
HTTP42858 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.77■□□□□ 0.12
HTTP42858 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC15.77■□□□□ 0.12
HTTP42858 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC15.77■□□□□ 0.12
HTTP42858 SAP18P2-201ENST00000434334 459 ntBASIC15.77■□□□□ 0.12
HTTP42858 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC15.77■□□□□ 0.12
HTTP42858 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC15.77■□□□□ 0.12
HTTP42858 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
HTTP42858 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HTTP42858 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.77■□□□□ 0.12
HTTP42858 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HTTP42858 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
HTTP42858 RNA5SP491-201ENST00000362936 118 ntBASIC15.77■□□□□ 0.11
HTTP42858 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC15.77■□□□□ 0.11
HTTP42858 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC15.77■□□□□ 0.11
HTTP42858 CETN3-205ENST00000522842 664 ntTSL 2 BASIC15.77■□□□□ 0.11
HTTP42858 MST1L-204ENST00000545160 559 ntTSL 4 BASIC15.77■□□□□ 0.11
HTTP42858 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HTTP42858 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC15.77■□□□□ 0.11
HTTP42858 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HTTP42858 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.77■□□□□ 0.11
HTTP42858 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HTTP42858 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HTTP42858 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.77■□□□□ 0.11
HTTP42858 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
HTTP42858 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HTTP42858 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HTTP42858 YY1P2-201ENST00000438766 948 ntBASIC15.77■□□□□ 0.11
HTTP42858 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC15.77■□□□□ 0.11
HTTP42858 RN7SL351P-201ENST00000469306 248 ntBASIC15.77■□□□□ 0.11
HTTP42858 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC15.77■□□□□ 0.11
HTTP42858 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC15.77■□□□□ 0.11
HTTP42858 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 VDAC1P11-201ENST00000458323 852 ntBASIC15.76■□□□□ 0.11
HTTP42858 ALDOAP1-201ENST00000491506 1078 ntBASIC15.76■□□□□ 0.11
HTTP42858 CDC37P2-201ENST00000562287 1029 ntBASIC15.76■□□□□ 0.11
HTTP42858 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC15.76■□□□□ 0.11
HTTP42858 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 AL118508.1-201ENST00000613502 2345 ntBASIC15.76■□□□□ 0.11
HTTP42858 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
HTTP42858 U3.5-201ENST00000363448 216 ntBASIC15.76■□□□□ 0.11
HTTP42858 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC15.76■□□□□ 0.11
HTTP42858 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 AC139100.2-201ENST00000616901 662 ntBASIC15.76■□□□□ 0.11
HTTP42858 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
HTTP42858 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HTTP42858 AMT-256ENST00000638063 1783 ntTSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HTTP42858 TBC1D27-202ENST00000424239 1573 ntBASIC15.75■□□□□ 0.11
HTTP42858 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC15.75■□□□□ 0.11
HTTP42858 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
HTTP42858 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC15.75■□□□□ 0.11
HTTP42858 UGT1A12P-201ENST00000447084 853 ntBASIC15.75■□□□□ 0.11
HTTP42858 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.75■□□□□ 0.11
HTTP42858 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms