Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 PDIA3P2-201ENST00000428073 158 ntBASIC16.6■□□□□ 0.25
SMARCA1P28370 AC012618.1-201ENST00000461223 412 ntBASIC16.6■□□□□ 0.25
SMARCA1P28370 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.6■□□□□ 0.25
SMARCA1P28370 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.6■□□□□ 0.25
SMARCA1P28370 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
SMARCA1P28370 MIR6769A-201ENST00000617340 73 ntBASIC16.6■□□□□ 0.25
SMARCA1P28370 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SMARCA1P28370 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SMARCA1P28370 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.6■□□□□ 0.25
SMARCA1P28370 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SMARCA1P28370 ELK2AP-201ENST00000392510 1007 ntBASIC16.59■□□□□ 0.25
SMARCA1P28370 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.59■□□□□ 0.25
SMARCA1P28370 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 KRT8P1-201ENST00000557533 1207 ntBASIC16.59■□□□□ 0.25
SMARCA1P28370 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.59■□□□□ 0.25
SMARCA1P28370 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.59■□□□□ 0.25
SMARCA1P28370 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SMARCA1P28370 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.59■□□□□ 0.25
SMARCA1P28370 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
SMARCA1P28370 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SMARCA1P28370 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.58■□□□□ 0.25
SMARCA1P28370 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.58■□□□□ 0.25
SMARCA1P28370 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 AC005089.1-201ENST00000619486 2241 ntBASIC16.58■□□□□ 0.25
SMARCA1P28370 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SMARCA1P28370 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 BANF1P3-201ENST00000412556 261 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SMARCA1P28370 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 DUX4L50-201ENST00000455245 715 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.58■□□□□ 0.24
SMARCA1P28370 AC116345.2-201ENST00000512837 523 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 PHBP15-201ENST00000574228 665 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms