Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR3147-201ENST00000577811 66 ntBASIC18.81■□□□□ 0.6
COL3A1P02461 NAT9-224ENST00000583757 583 ntTSL 3 BASIC18.81■□□□□ 0.6
COL3A1P02461 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
COL3A1P02461 AL031673.1-201ENST00000611460 466 ntBASIC18.81■□□□□ 0.6
COL3A1P02461 AC026748.1-201ENST00000624349 3251 ntBASIC18.81■□□□□ 0.6
COL3A1P02461 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.81■□□□□ 0.6
COL3A1P02461 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
COL3A1P02461 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL3A1P02461 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL3A1P02461 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 AL157996.1-201ENST00000624684 2299 ntBASIC18.8■□□□□ 0.6
COL3A1P02461 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 HLA-DMA-203ENST00000395305 777 ntBASIC18.8■□□□□ 0.6
COL3A1P02461 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COL3A1P02461 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.8■□□□□ 0.6
COL3A1P02461 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.8■□□□□ 0.6
COL3A1P02461 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL3A1P02461 AC073911.3-201ENST00000624401 631 ntBASIC18.8■□□□□ 0.6
COL3A1P02461 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC18.8■□□□□ 0.6
COL3A1P02461 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL3A1P02461 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC18.8■□□□□ 0.6
COL3A1P02461 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL3A1P02461 KRT8P24-201ENST00000560290 1559 ntBASIC18.8■□□□□ 0.6
COL3A1P02461 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC18.79■□□□□ 0.6
COL3A1P02461 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.79■□□□□ 0.6
COL3A1P02461 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.79■□□□□ 0.6
COL3A1P02461 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.79■□□□□ 0.6
COL3A1P02461 AP000911.2-201ENST00000534330 502 ntBASIC18.79■□□□□ 0.6
COL3A1P02461 KRT8P2-201ENST00000556193 944 ntBASIC18.79■□□□□ 0.6
COL3A1P02461 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC18.79■□□□□ 0.6
COL3A1P02461 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC18.79■□□□□ 0.6
COL3A1P02461 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC18.79■□□□□ 0.6
COL3A1P02461 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.79■□□□□ 0.6
COL3A1P02461 AC092978.1-202ENST00000637590 1327 ntBASIC18.79■□□□□ 0.6
COL3A1P02461 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC18.79■□□□□ 0.6
COL3A1P02461 GOLGA8UP-201ENST00000527159 1755 ntBASIC18.79■□□□□ 0.6
COL3A1P02461 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC18.79■□□□□ 0.6
COL3A1P02461 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
COL3A1P02461 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC18.79■□□□□ 0.6
COL3A1P02461 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL3A1P02461 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC18.78■□□□□ 0.6
COL3A1P02461 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL3A1P02461 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
COL3A1P02461 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC18.78■□□□□ 0.6
COL3A1P02461 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC18.78■□□□□ 0.6
COL3A1P02461 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.78■□□□□ 0.6
COL3A1P02461 AP002803.1-201ENST00000528836 498 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms