Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MIR8071-2-201ENST00000616772 65 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP4O75161 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP4O75161 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP4O75161 AC015909.5-201ENST00000624336 2266 ntBASIC19.84■□□□□ 0.77
NPHP4O75161 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP4O75161 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
NPHP4O75161 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP4O75161 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 HCG11-201ENST00000411553 5696 ntBASIC19.84■□□□□ 0.77
NPHP4O75161 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP4O75161 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
NPHP4O75161 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
NPHP4O75161 HMGA1P2-201ENST00000430198 324 ntBASIC19.84■□□□□ 0.77
NPHP4O75161 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC19.84■□□□□ 0.77
NPHP4O75161 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC19.84■□□□□ 0.77
NPHP4O75161 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC19.84■□□□□ 0.77
NPHP4O75161 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC19.84■□□□□ 0.77
NPHP4O75161 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP4O75161 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP4O75161 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
NPHP4O75161 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.83■□□□□ 0.77
NPHP4O75161 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP4O75161 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 ASS1P1-201ENST00000402854 1237 ntBASIC19.83■□□□□ 0.76
NPHP4O75161 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 CDKN2A-AS1-201ENST00000441769 823 ntBASIC19.83■□□□□ 0.76
NPHP4O75161 FAM86JP-202ENST00000484500 988 ntBASIC19.83■□□□□ 0.76
NPHP4O75161 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC19.83■□□□□ 0.76
NPHP4O75161 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC19.83■□□□□ 0.76
NPHP4O75161 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
NPHP4O75161 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC19.83■□□□□ 0.76
NPHP4O75161 NAT9-219ENST00000582524 573 ntTSL 4 BASIC19.83■□□□□ 0.76
NPHP4O75161 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC19.83■□□□□ 0.76
NPHP4O75161 AC123912.6-201ENST00000612657 315 ntBASIC19.83■□□□□ 0.76
NPHP4O75161 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC19.83■□□□□ 0.76
NPHP4O75161 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC19.83■□□□□ 0.76
NPHP4O75161 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC19.83■□□□□ 0.76
NPHP4O75161 MEP1AP1-201ENST00000636082 1097 ntBASIC19.83■□□□□ 0.76
NPHP4O75161 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
NPHP4O75161 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC19.83■□□□□ 0.76
NPHP4O75161 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP4O75161 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 AC103592.1-201ENST00000394513 664 ntBASIC19.82■□□□□ 0.76
NPHP4O75161 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 YY1P2-201ENST00000438766 948 ntBASIC19.82■□□□□ 0.76
NPHP4O75161 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 RN7SL838P-201ENST00000481676 295 ntBASIC19.82■□□□□ 0.76
NPHP4O75161 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 AC010202.1-201ENST00000551181 405 ntBASIC19.82■□□□□ 0.76
NPHP4O75161 AL512310.5-201ENST00000551999 515 ntBASIC19.82■□□□□ 0.76
NPHP4O75161 AC120498.5-201ENST00000561757 299 ntBASIC19.82■□□□□ 0.76
NPHP4O75161 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC19.82■□□□□ 0.76
NPHP4O75161 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
NPHP4O75161 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP4O75161 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP4O75161 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP4O75161 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP4O75161 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP4O75161 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms