Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 TENM3-204ENST00000511685 10896 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 TUBGCP4-208ENST00000564079 6798 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC11.8□□□□□ -0.52
HMGB3O15347 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 PCDHB18P-202ENST00000526308 3197 ntBASIC11.8□□□□□ -0.52
HMGB3O15347 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 SYT11-201ENST00000368324 5240 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 ZFR-201ENST00000265069 4738 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 SHANK2-201ENST00000338508 7271 ntTSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 AL353705.2-201ENST00000428243 662 ntBASIC11.8□□□□□ -0.52
HMGB3O15347 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.8□□□□□ -0.52
HMGB3O15347 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC11.8□□□□□ -0.52
HMGB3O15347 TMEM198B-204ENST00000484016 896 ntBASIC11.8□□□□□ -0.52
HMGB3O15347 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 AC106730.1-201ENST00000566722 1090 ntBASIC11.8□□□□□ -0.52
HMGB3O15347 AC105021.1-202ENST00000570572 669 ntBASIC11.8□□□□□ -0.52
HMGB3O15347 SSH2-211ENST00000590153 570 ntTSL 4 BASIC11.8□□□□□ -0.52
HMGB3O15347 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
HMGB3O15347 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 AL645728.2-202ENST00000641679 227 ntBASIC11.8□□□□□ -0.52
HMGB3O15347 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 LOXHD1-210ENST00000536736 6848 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
HMGB3O15347 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
HMGB3O15347 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
HMGB3O15347 BRD1-203ENST00000404760 4550 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 AC114271.1-201ENST00000612689 2813 ntBASIC11.79□□□□□ -0.52
HMGB3O15347 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 NEK7-201ENST00000367383 586 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC11.79□□□□□ -0.52
HMGB3O15347 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC11.79□□□□□ -0.52
HMGB3O15347 AC079140.1-201ENST00000508039 487 ntBASIC11.79□□□□□ -0.52
HMGB3O15347 KRT8P48-201ENST00000515599 1220 ntBASIC11.79□□□□□ -0.52
HMGB3O15347 FAM86C2P-203ENST00000528684 1004 ntBASIC11.79□□□□□ -0.52
HMGB3O15347 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC11.79□□□□□ -0.52
HMGB3O15347 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC11.79□□□□□ -0.52
HMGB3O15347 CD63-204ENST00000546939 779 ntTSL 3 BASIC11.79□□□□□ -0.52
HMGB3O15347 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC11.79□□□□□ -0.52
HMGB3O15347 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HMGB3O15347 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
HMGB3O15347 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms