Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AC103988.2-201ENST00000561804 725 ntBASIC11.86□□□□□ -0.51
FOXA2Q9Y261 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AC004466.1-201ENST00000599515 1080 ntBASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AC138696.2-201ENST00000607376 223 ntBASIC11.86□□□□□ -0.51
FOXA2Q9Y261 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AP001002.3-201ENST00000623482 206 ntBASIC11.86□□□□□ -0.51
FOXA2Q9Y261 FUK-202ENST00000378912 3925 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
FOXA2Q9Y261 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AC139712.1-201ENST00000378256 1875 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ZBTB12BP-201ENST00000314232 1122 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 KRT17P8-201ENST00000540749 863 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 RAB43P1-201ENST00000561790 589 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ORC6-206ENST00000568364 888 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AC025279.2-201ENST00000569730 653 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AC239800.4-201ENST00000603712 296 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ENPP7P14-201ENST00000621765 1040 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 AC132938.4-201ENST00000623835 848 ntBASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA2Q9Y261 KHSRPP1-201ENST00000427983 1768 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 AL138709.1-201ENST00000614840 1693 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA2Q9Y261 CICP16-201ENST00000502609 2813 ntBASIC11.84□□□□□ -0.51
FOXA2Q9Y261 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms