Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 SLC25A24P2-201ENST00000415059 510 ntBASIC14.79□□□□□ -0.04
TRIM4Q9C037 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 TARDBPP1-201ENST00000442013 1203 ntBASIC14.79□□□□□ -0.04
TRIM4Q9C037 CSF2RBP1-201ENST00000447905 391 ntBASIC14.79□□□□□ -0.04
TRIM4Q9C037 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM4Q9C037 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM4Q9C037 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 SERBP1P3-201ENST00000459980 809 ntBASIC14.78□□□□□ -0.04
TRIM4Q9C037 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 U62317.3-201ENST00000608319 855 ntBASIC14.78□□□□□ -0.04
TRIM4Q9C037 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 AMT-221ENST00000538581 2038 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM4Q9C037 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM4Q9C037 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.77□□□□□ -0.04
TRIM4Q9C037 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.77□□□□□ -0.04
TRIM4Q9C037 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
TRIM4Q9C037 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.77□□□□□ -0.04
TRIM4Q9C037 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
TRIM4Q9C037 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 AC023024.2-201ENST00000623561 1993 ntBASIC14.77□□□□□ -0.04
TRIM4Q9C037 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM4Q9C037 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
TRIM4Q9C037 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM4Q9C037 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM4Q9C037 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms