Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC139749.1-202ENST00000617529 3139 ntBASIC12.4□□□□□ -0.42
COL12A1Q99715 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC12.4□□□□□ -0.42
COL12A1Q99715 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC12.4□□□□□ -0.42
COL12A1Q99715 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC12.4□□□□□ -0.42
COL12A1Q99715 AP000533.1-201ENST00000456143 1177 ntBASIC12.4□□□□□ -0.42
COL12A1Q99715 OR2A1-AS1-203ENST00000468575 568 ntBASIC12.4□□□□□ -0.42
COL12A1Q99715 AC004801.1-201ENST00000549557 360 ntBASIC12.4□□□□□ -0.42
COL12A1Q99715 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.4□□□□□ -0.42
COL12A1Q99715 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC12.4□□□□□ -0.42
COL12A1Q99715 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC12.4□□□□□ -0.42
COL12A1Q99715 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.4□□□□□ -0.42
COL12A1Q99715 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL12A1Q99715 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC12.4□□□□□ -0.43
COL12A1Q99715 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
COL12A1Q99715 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
COL12A1Q99715 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.4□□□□□ -0.43
COL12A1Q99715 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
COL12A1Q99715 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
COL12A1Q99715 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
COL12A1Q99715 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC12.4□□□□□ -0.43
COL12A1Q99715 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
COL12A1Q99715 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL12A1Q99715 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.39□□□□□ -0.43
COL12A1Q99715 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.39□□□□□ -0.43
COL12A1Q99715 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
COL12A1Q99715 CA5BP1-205ENST00000435806 1064 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC12.39□□□□□ -0.43
COL12A1Q99715 AC010894.2-201ENST00000444196 561 ntTSL 3 BASIC12.39□□□□□ -0.43
COL12A1Q99715 UGT1A12P-201ENST00000447084 853 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 ALDOAP1-201ENST00000491506 1078 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC12.39□□□□□ -0.43
COL12A1Q99715 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 MIR6165-201ENST00000614803 84 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 C18orf15-201ENST00000623680 2534 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL12A1Q99715 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC12.39□□□□□ -0.43
COL12A1Q99715 HNRNPA1P59-201ENST00000430583 918 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC12.39□□□□□ -0.43
COL12A1Q99715 RN7SL605P-201ENST00000577229 281 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 AC009041.4-201ENST00000620075 638 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC12.39□□□□□ -0.43
COL12A1Q99715 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC12.39□□□□□ -0.43
COL12A1Q99715 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 BX322562.1-201ENST00000617004 561 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 AC134878.2-201ENST00000620700 1265 ntBASIC12.39□□□□□ -0.43
COL12A1Q99715 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL12A1Q99715 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.39□□□□□ -0.43
COL12A1Q99715 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
COL12A1Q99715 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL12A1Q99715 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL12A1Q99715 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.38□□□□□ -0.43
COL12A1Q99715 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL12A1Q99715 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.38□□□□□ -0.43
COL12A1Q99715 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.38□□□□□ -0.43
COL12A1Q99715 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.38□□□□□ -0.43
COL12A1Q99715 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL12A1Q99715 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL12A1Q99715 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL12A1Q99715 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC12.38□□□□□ -0.43
COL12A1Q99715 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC12.38□□□□□ -0.43
COL12A1Q99715 OR52V1P-201ENST00000515557 898 ntBASIC12.38□□□□□ -0.43
COL12A1Q99715 SNORD3B-1-201ENST00000577988 758 ntBASIC12.38□□□□□ -0.43
COL12A1Q99715 PPY-202ENST00000587006 431 ntTSL 3 BASIC12.38□□□□□ -0.43
COL12A1Q99715 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC12.38□□□□□ -0.43
COL12A1Q99715 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL12A1Q99715 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL12A1Q99715 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms