Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC007663.3-201ENST00000609632 465 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AP000845.1-201ENST00000581677 2131 ntBASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP3Q96DZ5 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC004945.1-201ENST00000416738 983 ntBASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC021723.1-201ENST00000486306 515 ntBASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ZNF767P-206ENST00000513792 565 ntBASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AC020914.3-201ENST00000594712 304 ntBASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP3Q96DZ5 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 LILRP1-201ENST00000444199 1370 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms