Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PRICKLE1-216ENST00000640132 4278 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 FBLN2-201ENST00000295760 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ZNF621-201ENST00000310898 2404 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL590428.1-201ENST00000428865 1973 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 CADM3-202ENST00000368125 3745 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MPP2-202ENST00000377184 4206 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 HSPA14-202ENST00000437161 1689 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 CXorf38-203ENST00000378426 4895 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 EMG1-202ENST00000599672 4898 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 PYGO2-202ENST00000368457 3146 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 EIF3C-209ENST00000566501 3128 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 CICP2-201ENST00000420675 2328 ntBASIC9□□□□□ -0.97
LINC00643Q86TS7 LINC00668-204ENST00000580197 2343 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 SHOX-203ENST00000381578 3757 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 MROH7-204ENST00000409996 2977 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ZFAT-202ENST00000429442 4421 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 KCNH1-205ENST00000638498 3479 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 ABCB9-211ENST00000540285 3330 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 PLEC-210ENST00000527096 13713 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 PID1-203ENST00000392055 2533 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 SNRNP48-201ENST00000342415 4173 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 RNF144B-201ENST00000259939 5036 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 CNOT4-203ENST00000361528 2215 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 TRAF3IP3-203ENST00000367025 2243 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 OTOA-203ENST00000388957 2703 ntAPPRIS ALT2 TSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 LEPR-201ENST00000344610 2935 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC9□□□□□ -0.97
LINC00643Q86TS7 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 AC104457.1-201ENST00000401024 814 ntBASIC9□□□□□ -0.97
LINC00643Q86TS7 NBPF17P-201ENST00000401087 2119 ntBASIC9□□□□□ -0.97
LINC00643Q86TS7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AC083906.2-201ENST00000511578 360 ntBASIC9□□□□□ -0.97
LINC00643Q86TS7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC9□□□□□ -0.97
LINC00643Q86TS7 AL645728.2-202ENST00000641679 227 ntBASIC9□□□□□ -0.97
LINC00643Q86TS7 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 RBFOX1-208ENST00000547372 3524 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 BACH2-210ENST00000537989 9108 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 STIM1-209ENST00000527651 2184 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ANGEL2-208ENST00000535388 2517 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 LINC00664-203ENST00000599078 3760 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 REXO5-201ENST00000261377 2722 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 L1CAM-202ENST00000361981 5004 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ARSJ-201ENST00000315366 4657 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 TENM3-204ENST00000511685 10896 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 ZNF142-201ENST00000411696 5926 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 MSH6-213ENST00000614496 4150 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 COBLL1-202ENST00000375458 9367 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 LPXN-203ENST00000528954 1879 ntAPPRIS ALT2 TSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 RIPK4-202ENST00000352483 4016 ntTSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 STRADA-204ENST00000392950 2778 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 PLEKHG5-208ENST00000400915 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC9□□□□□ -0.97
LINC00643Q86TS7 FOXJ3-202ENST00000361776 5106 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 NT5C3A-214ENST00000620705 1704 ntTSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ZNF674-201ENST00000414387 2274 ntAPPRIS ALT2 TSL 3 BASIC9□□□□□ -0.97
LINC00643Q86TS7 PHLPP2-204ENST00000567016 4812 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
LINC00643Q86TS7 SETD7-201ENST00000274031 7365 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
LINC00643Q86TS7 ANKRD34B-201ENST00000338682 3938 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CCAR2-206ENST00000520861 3560 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms