RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 NISCHQ9Y2I1 1504 aa22.25■■□□□ 1.15
SNRNP48-201ENST00000342415 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
SNRNP48-201ENST00000342415 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
SNRNP48-201ENST00000342415 SHROOM4Q9ULL8 1493 aa21.22■□□□□ 0.99
SNRNP48-201ENST00000342415 EHMT2Q96KQ7 1210 aa20.44■□□□□ 0.86
SNRNP48-201ENST00000342415 PCGF6Q9BYE7 350 aa20.39■□□□□ 0.85
SNRNP48-201ENST00000342415 FAM9AQ8IZU1 332 aaPredicted RBP20.02■□□□□ 0.8
SNRNP48-201ENST00000342415 PPARGC1BQ86YN6 1023 aaKnown RBP19.78■□□□□ 0.76
SNRNP48-201ENST00000342415 HRCP23327 699 aa19.76■□□□□ 0.75
SNRNP48-201ENST00000342415 TTBK1Q5TCY1 1321 aaPredicted RBP19.75■□□□□ 0.75
SNRNP48-201ENST00000342415 LOC105371045A0A1W2PR82 267 aa19.74■□□□□ 0.75
SNRNP48-201ENST00000342415 CHIC1Q5VXU3 224 aa19.72■□□□□ 0.75
SNRNP48-201ENST00000342415 TRIM41Q8WV44 630 aa19.53■□□□□ 0.72
SNRNP48-201ENST00000342415 TRIM26Q12899 539 aaPredicted RBP19.34■□□□□ 0.69
SNRNP48-201ENST00000342415 CCER1Q8TC90 406 aaPredicted RBP19.31■□□□□ 0.68
SNRNP48-201ENST00000342415 ZEB1P37275 1124 aaPredicted RBP19.22■□□□□ 0.67
SNRNP48-201ENST00000342415 RANGAP1P46060 587 aaPredicted RBP19.22■□□□□ 0.67
SNRNP48-201ENST00000342415 YTHDC1Q96MU7 727 aaKnown RBP19.08■□□□□ 0.65
SNRNP48-201ENST00000342415 APLP2Q06481 763 aa19■□□□□ 0.63
SNRNP48-201ENST00000342415 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.99■□□□□ 0.63
SNRNP48-201ENST00000342415 UBTFP17480 764 aaKnown RBP18.99■□□□□ 0.63
SNRNP48-201ENST00000342415 CENPBP07199 599 aaPredicted RBP18.98■□□□□ 0.63
SNRNP48-201ENST00000342415 MYO15BQ96JP2 1530 aa18.91■□□□□ 0.62
SNRNP48-201ENST00000342415 PELP1Q8IZL8 1130 aaKnown RBP18.84■□□□□ 0.61
SNRNP48-201ENST00000342415 HNRNPUL2Q1KMD3 747 aaKnown RBP18.71■□□□□ 0.59
SNRNP48-201ENST00000342415 DIEXFQ68CQ4 756 aaKnown RBP18.66■□□□□ 0.58
SNRNP48-201ENST00000342415 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
SNRNP48-201ENST00000342415 GTF3C3Q9Y5Q9 886 aa18.56■□□□□ 0.56
SNRNP48-201ENST00000342415 ATP1B4Q9UN42 357 aaPredicted RBP18.55■□□□□ 0.56
SNRNP48-201ENST00000342415 ITGAEP38570 1179 aa18.52■□□□□ 0.55
SNRNP48-201ENST00000342415 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
SNRNP48-201ENST00000342415 ABCC9O60706 1549 aa18.43■□□□□ 0.54
SNRNP48-201ENST00000342415 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
SNRNP48-201ENST00000342415 ACIN1Q9UKV3 1341 aaKnown RBP18.37■□□□□ 0.53
SNRNP48-201ENST00000342415 NEUROD1Q13562 356 aa18.33■□□□□ 0.52
SNRNP48-201ENST00000342415 PABPN1Q86U42 306 aaKnown RBP eCLIP18.32■□□□□ 0.52
SNRNP48-201ENST00000342415 ZNF316A6NFI3 1004 aaPredicted RBP18.2■□□□□ 0.5
SNRNP48-201ENST00000342415 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
SNRNP48-201ENST00000342415 NEFLP07196 543 aa18.12■□□□□ 0.49
SNRNP48-201ENST00000342415 BCANQ96GW7 911 aa18.11■□□□□ 0.49
SNRNP48-201ENST00000342415 CSRNP3Q8WYN3 585 aa18.1■□□□□ 0.49
SNRNP48-201ENST00000342415 MYT1Q01538 1121 aa18.07■□□□□ 0.48
SNRNP48-201ENST00000342415 CNGB1Q14028 1251 aaPredicted RBP18.06■□□□□ 0.48
SNRNP48-201ENST00000342415 ERICH6Q7L0X2 663 aa18.06■□□□□ 0.48
SNRNP48-201ENST00000342415 RSF1Q96T23 1441 aaPredicted RBP18.05■□□□□ 0.48
SNRNP48-201ENST00000342415 MIER1Q8N108 512 aa17.98■□□□□ 0.47
SNRNP48-201ENST00000342415 CCDC180Q9P1Z9 1646 aa17.93■□□□□ 0.46
SNRNP48-201ENST00000342415 FAM50AQ14320 339 aaKnown RBP17.93■□□□□ 0.46
SNRNP48-201ENST00000342415 POLR3GLQ9BT43 218 aa17.87■□□□□ 0.45
SNRNP48-201ENST00000342415 P3H3Q8IVL6 736 aa17.8■□□□□ 0.44
SNRNP48-201ENST00000342415 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
SNRNP48-201ENST00000342415 CEP162Q5TB80 1403 aa17.71■□□□□ 0.43
SNRNP48-201ENST00000342415 HIRIP3Q9BW71 556 aaPredicted RBP17.7■□□□□ 0.42
SNRNP48-201ENST00000342415 RB1CC1Q8TDY2 1594 aa17.69■□□□□ 0.42
SNRNP48-201ENST00000342415 DDX10Q13206 875 aaKnown RBP17.68■□□□□ 0.42
SNRNP48-201ENST00000342415 FKBP8Q14318 412 aa17.65■□□□□ 0.42
SNRNP48-201ENST00000342415 TRIM52Q96A61 297 aa17.61■□□□□ 0.41
SNRNP48-201ENST00000342415 ANP32CO43423 234 aa17.61■□□□□ 0.41
SNRNP48-201ENST00000342415 SOGA1O94964 1423 aa17.58■□□□□ 0.41
SNRNP48-201ENST00000342415 ARID3CA6NKF2 412 aa17.57■□□□□ 0.4
SNRNP48-201ENST00000342415 CLIP1P30622 1438 aa17.56■□□□□ 0.4
SNRNP48-201ENST00000342415 MROH2BQ7Z745 1585 aa17.48■□□□□ 0.39
SNRNP48-201ENST00000342415 TNIKQ9UKE5 1360 aa17.48■□□□□ 0.39
SNRNP48-201ENST00000342415 ZNF326Q5BKZ1 582 aaKnown RBP17.47■□□□□ 0.39
SNRNP48-201ENST00000342415 IRX6P78412 446 aaPredicted RBP17.46■□□□□ 0.39
SNRNP48-201ENST00000342415 CCDC88BA6NC98 1476 aa17.45■□□□□ 0.38
SNRNP48-201ENST00000342415 ABCC8Q09428 1581 aa17.45■□□□□ 0.38
SNRNP48-201ENST00000342415 HNRNPUQ00839 825 aaKnown RBP eCLIP17.4■□□□□ 0.38
SNRNP48-201ENST00000342415 GOLGA3Q08378 1498 aa17.4■□□□□ 0.38
SNRNP48-201ENST00000342415 CDK11AQ9UQ88 783 aaPredicted RBP17.39■□□□□ 0.37
SNRNP48-201ENST00000342415 WRNQ14191 1432 aaPredicted RBP eCLIP17.38■□□□□ 0.37
SNRNP48-201ENST00000342415 SIN3AQ96ST3 1273 aa17.36■□□□□ 0.37
SNRNP48-201ENST00000342415 SUPT16HQ9Y5B9 1047 aaKnown RBP17.36■□□□□ 0.37
SNRNP48-201ENST00000342415 SENP3-EIF4A1A0A087X0R7 540 aa17.34■□□□□ 0.37
SNRNP48-201ENST00000342415 CHIC2Q9UKJ5 165 aa17.33■□□□□ 0.36
SNRNP48-201ENST00000342415 FAM9BQ8IZU0 186 aa17.32■□□□□ 0.36
SNRNP48-201ENST00000342415 KANK4Q5T7N3 995 aaPredicted RBP17.3■□□□□ 0.36
SNRNP48-201ENST00000342415 TONSLQ96HA7 1378 aa17.29■□□□□ 0.36
SNRNP48-201ENST00000342415 WIZO95785 1651 aa17.28■□□□□ 0.36
SNRNP48-201ENST00000342415 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
SNRNP48-201ENST00000342415 EEA1Q15075 1411 aa17.27■□□□□ 0.36
SNRNP48-201ENST00000342415 MYT1LQ9UL68 1186 aa17.26■□□□□ 0.35
SNRNP48-201ENST00000342415 FBLN2P98095 1184 aa17.25■□□□□ 0.35
SNRNP48-201ENST00000342415 KCNH8Q96L42 1107 aa17.24■□□□□ 0.35
SNRNP48-201ENST00000342415 CLSPNQ9HAW4 1339 aa17.22■□□□□ 0.35
SNRNP48-201ENST00000342415 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
SNRNP48-201ENST00000342415 RTL5Q5HYW3 569 aaPredicted RBP17.2■□□□□ 0.34
SNRNP48-201ENST00000342415 SALL2Q9Y467 1007 aaPredicted RBP17.2■□□□□ 0.34
SNRNP48-201ENST00000342415 BAZ1AQ9NRL2 1556 aaPredicted RBP17.19■□□□□ 0.34
SNRNP48-201ENST00000342415 DAXXQ9UER7 740 aaPredicted RBP17.18■□□□□ 0.34
SNRNP48-201ENST00000342415 NACADO15069 1562 aa17.16■□□□□ 0.34
SNRNP48-201ENST00000342415 RRP7BPQ9NSQ0 103 aa17.15■□□□□ 0.34
SNRNP48-201ENST00000342415 ZNF777Q9ULD5 760 aaPredicted RBP17.15■□□□□ 0.34
SNRNP48-201ENST00000342415 NPM2Q86SE8 214 aaKnown RBP17.15■□□□□ 0.34
SNRNP48-201ENST00000342415 ANP32EQ9BTT0 268 aa17.13■□□□□ 0.33
SNRNP48-201ENST00000342415 NBR1Q14596 966 aa17.12■□□□□ 0.33
SNRNP48-201ENST00000342415 VPS8Q8N3P4 1428 aa17.11■□□□□ 0.33
SNRNP48-201ENST00000342415 MRS2Q9HD23 443 aa17.1■□□□□ 0.33
SNRNP48-201ENST00000342415 TSHZ2Q9NRE2 1034 aa17.07■□□□□ 0.32
SNRNP48-201ENST00000342415 CCNB3Q8WWL7 1395 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms