Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SYNE3Q6ZMZ3 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 MIR326-201ENST00000362220 95 ntBASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 AC100850.1-201ENST00000506768 649 ntBASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SYNE3Q6ZMZ3 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AC009093.10-201ENST00000641956 1442 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AC215219.1-201ENST00000400706 1817 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 BNIP3P42-201ENST00000454982 569 ntBASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.22■□□□□ 0.35
SYNE3Q6ZMZ3 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms