Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 AC074338.1-201ENST00000416825 156 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 AC107890.1-201ENST00000422478 521 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 HLA-V-204ENST00000476601 1289 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 AC051619.7-201ENST00000568314 623 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 LINC01115-203ENST00000606068 577 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 TEX28P1-201ENST00000613479 1221 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 TEX28P2-201ENST00000617764 1221 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 AC093028.1-201ENST00000622998 982 ntBASIC13.11□□□□□ -0.31
SCN1BQ07699 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC13.11□□□□□ -0.31
SCN1BQ07699 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SCN1BQ07699 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SCN1BQ07699 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SCN1BQ07699 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
SCN1BQ07699 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 Z97205.2-201ENST00000564697 1639 ntBASIC13.1□□□□□ -0.31
SCN1BQ07699 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.1□□□□□ -0.31
SCN1BQ07699 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SCN1BQ07699 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.1□□□□□ -0.31
SCN1BQ07699 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.1□□□□□ -0.31
SCN1BQ07699 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SCN1BQ07699 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SCN1BQ07699 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.1□□□□□ -0.31
SCN1BQ07699 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.1□□□□□ -0.31
SCN1BQ07699 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.1□□□□□ -0.31
SCN1BQ07699 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.1□□□□□ -0.31
SCN1BQ07699 FAM86GP-201ENST00000448322 971 ntBASIC13.1□□□□□ -0.31
SCN1BQ07699 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.1□□□□□ -0.31
SCN1BQ07699 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.1□□□□□ -0.31
SCN1BQ07699 IGHV3-42-201ENST00000520410 361 ntBASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms