Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.82□□□□□ -0.2
RAE1P78406 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.82□□□□□ -0.2
RAE1P78406 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.82□□□□□ -0.2
RAE1P78406 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RAE1P78406 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.82□□□□□ -0.2
RAE1P78406 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RAE1P78406 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.82□□□□□ -0.2
RAE1P78406 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RAE1P78406 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
RAE1P78406 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.81□□□□□ -0.2
RAE1P78406 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.81□□□□□ -0.2
RAE1P78406 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.81□□□□□ -0.2
RAE1P78406 ST13P19-201ENST00000442505 1124 ntBASIC13.81□□□□□ -0.2
RAE1P78406 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.81□□□□□ -0.2
RAE1P78406 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
RAE1P78406 AC079316.1-201ENST00000548397 411 ntBASIC13.81□□□□□ -0.2
RAE1P78406 AC023310.1-201ENST00000554836 735 ntBASIC13.81□□□□□ -0.2
RAE1P78406 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RAE1P78406 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.81□□□□□ -0.2
RAE1P78406 Z98259.2-201ENST00000641583 609 ntBASIC13.81□□□□□ -0.2
RAE1P78406 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
RAE1P78406 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RAE1P78406 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.81□□□□□ -0.2
RAE1P78406 OR2I1P-209ENST00000641730 5365 ntBASIC13.81□□□□□ -0.2
RAE1P78406 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.8□□□□□ -0.2
RAE1P78406 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.8□□□□□ -0.2
RAE1P78406 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.8□□□□□ -0.2
RAE1P78406 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RAE1P78406 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
RAE1P78406 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.8□□□□□ -0.2
RAE1P78406 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.8□□□□□ -0.2
RAE1P78406 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RAE1P78406 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RAE1P78406 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.8□□□□□ -0.2
RAE1P78406 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.8□□□□□ -0.2
RAE1P78406 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RAE1P78406 MIR1909-201ENST00000411312 80 ntBASIC13.8□□□□□ -0.2
RAE1P78406 AC234783.1-201ENST00000441761 496 ntBASIC13.8□□□□□ -0.2
RAE1P78406 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.8□□□□□ -0.2
RAE1P78406 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.8□□□□□ -0.2
RAE1P78406 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.8□□□□□ -0.2
RAE1P78406 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms