Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 FAM90A12P-201ENST00000519497 2375 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 FAM90A24P-201ENST00000520792 2369 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PKNOX1P55347 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.41□□□□□ -0.1
PKNOX1P55347 AC215219.1-201ENST00000400706 1817 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PKNOX1P55347 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PKNOX1P55347 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 RN7SKP230-201ENST00000365642 335 ntBASIC14.4□□□□□ -0.1
PKNOX1P55347 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 ELK1P1-201ENST00000485699 580 ntBASIC14.4□□□□□ -0.1
PKNOX1P55347 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.4□□□□□ -0.1
PKNOX1P55347 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 AC138696.2-201ENST00000607376 223 ntBASIC14.4□□□□□ -0.1
PKNOX1P55347 CU634019.7-201ENST00000624153 1185 ntBASIC14.4□□□□□ -0.1
PKNOX1P55347 FP236241.2-201ENST00000624906 1185 ntBASIC14.4□□□□□ -0.1
PKNOX1P55347 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.4□□□□□ -0.1
PKNOX1P55347 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PKNOX1P55347 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.4□□□□□ -0.1
PKNOX1P55347 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.4□□□□□ -0.11
PKNOX1P55347 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC023794.5-201ENST00000564380 2157 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms