Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.84□□□□□ -0.19
RFX3P48380 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.84□□□□□ -0.19
RFX3P48380 AC025279.2-201ENST00000569730 653 ntBASIC13.84□□□□□ -0.19
RFX3P48380 GNRHR2-203ENST00000581100 1187 ntBASIC13.84□□□□□ -0.19
RFX3P48380 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 AC138951.2-201ENST00000623455 1161 ntBASIC13.84□□□□□ -0.19
RFX3P48380 AL035252.4-201ENST00000624174 288 ntBASIC13.84□□□□□ -0.19
RFX3P48380 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.84□□□□□ -0.19
RFX3P48380 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 AC073957.3-201ENST00000609998 6758 ntBASIC13.84□□□□□ -0.19
RFX3P48380 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 FKBP4P6-201ENST00000457486 1332 ntBASIC13.84□□□□□ -0.19
RFX3P48380 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 AL354989.2-201ENST00000435838 1540 ntBASIC13.84□□□□□ -0.19
RFX3P48380 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RFX3P48380 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.83□□□□□ -0.19
RFX3P48380 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.83□□□□□ -0.19
RFX3P48380 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RFX3P48380 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RFX3P48380 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.19
RFX3P48380 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RFX3P48380 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RFX3P48380 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 INE2-201ENST00000630399 1874 ntBASIC13.83□□□□□ -0.2
RFX3P48380 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 AC003102.2-201ENST00000589195 1469 ntBASIC13.83□□□□□ -0.2
RFX3P48380 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.83□□□□□ -0.2
RFX3P48380 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 AC092933.1-201ENST00000393644 945 ntBASIC13.83□□□□□ -0.2
RFX3P48380 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.83□□□□□ -0.2
RFX3P48380 AC007551.1-201ENST00000457394 519 ntBASIC13.83□□□□□ -0.2
RFX3P48380 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
RFX3P48380 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.83□□□□□ -0.2
RFX3P48380 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 BEND3P1-201ENST00000421591 1944 ntBASIC13.83□□□□□ -0.2
RFX3P48380 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 AC011840.2-201ENST00000563063 1520 ntBASIC13.83□□□□□ -0.2
RFX3P48380 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.83□□□□□ -0.2
RFX3P48380 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
RFX3P48380 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RFX3P48380 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms