Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
CXCL12P48061 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.33□□□□□ -0.12
CXCL12P48061 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 AC067931.2-201ENST00000623655 2003 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 OR7E115P-201ENST00000382617 1024 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 BX679664.3-201ENST00000414070 555 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC14.32□□□□□ -0.12
CXCL12P48061 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.32□□□□□ -0.12
CXCL12P48061 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC14.32□□□□□ -0.12
CXCL12P48061 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC14.32□□□□□ -0.12
CXCL12P48061 AC113935.1-201ENST00000471722 555 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 AC106047.2-201ENST00000511723 743 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC14.32□□□□□ -0.12
CXCL12P48061 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC14.32□□□□□ -0.12
CXCL12P48061 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 SRP14-204ENST00000558720 780 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CXCL12P48061 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CXCL12P48061 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CXCL12P48061 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL12P48061 LINC00528-201ENST00000600723 2160 ntBASIC14.32□□□□□ -0.12
CXCL12P48061 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 AC026691.1-201ENST00000602502 2017 ntBASIC14.31□□□□□ -0.12
CXCL12P48061 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.31□□□□□ -0.12
CXCL12P48061 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.31□□□□□ -0.12
CXCL12P48061 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 AC006529.1-201ENST00000459978 637 ntBASIC14.31□□□□□ -0.12
CXCL12P48061 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.31□□□□□ -0.12
CXCL12P48061 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.31□□□□□ -0.12
CXCL12P48061 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CXCL12P48061 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms