Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC17.03■□□□□ 0.32
BRCA1P38398 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 HNRNPA3P12-201ENST00000437410 1063 ntBASIC17.03■□□□□ 0.32
BRCA1P38398 AC010202.1-201ENST00000551181 405 ntBASIC17.03■□□□□ 0.32
BRCA1P38398 AC120498.5-201ENST00000561757 299 ntBASIC17.03■□□□□ 0.32
BRCA1P38398 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC17.03■□□□□ 0.32
BRCA1P38398 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC17.03■□□□□ 0.32
BRCA1P38398 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.03■□□□□ 0.32
BRCA1P38398 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
BRCA1P38398 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 AL031590.1-202ENST00000641466 1737 ntBASIC17.02■□□□□ 0.32
BRCA1P38398 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 STK16-202ENST00000409260 1493 ntTSL 5 BASIC17.02■□□□□ 0.32
BRCA1P38398 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC17.02■□□□□ 0.32
BRCA1P38398 AL162727.3-201ENST00000635661 2787 ntBASIC17.02■□□□□ 0.32
BRCA1P38398 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
BRCA1P38398 SNU13-204ENST00000402458 462 ntTSL 3 BASIC17.02■□□□□ 0.32
BRCA1P38398 TUBB2BP1-201ENST00000404155 871 ntBASIC17.02■□□□□ 0.32
BRCA1P38398 AC015818.1-201ENST00000451011 244 ntBASIC17.02■□□□□ 0.32
BRCA1P38398 RNASEH2CP1-201ENST00000454281 502 ntBASIC17.02■□□□□ 0.32
BRCA1P38398 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC17.02■□□□□ 0.32
BRCA1P38398 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC17.02■□□□□ 0.32
BRCA1P38398 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC17.02■□□□□ 0.32
BRCA1P38398 GARS-210ENST00000627489 324 ntTSL 4 BASIC17.02■□□□□ 0.32
BRCA1P38398 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BRCA1P38398 RPL4P6-201ENST00000438116 1304 ntBASIC17.02■□□□□ 0.32
BRCA1P38398 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.02■□□□□ 0.31
BRCA1P38398 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
BRCA1P38398 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 AL121753.2-201ENST00000624581 1461 ntBASIC17.02■□□□□ 0.31
BRCA1P38398 AC084018.2-201ENST00000613093 2607 ntBASIC17.02■□□□□ 0.31
BRCA1P38398 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.02■□□□□ 0.31
BRCA1P38398 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.02■□□□□ 0.31
BRCA1P38398 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BRCA1P38398 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 AC113398.1-201ENST00000464124 406 ntBASIC17.01■□□□□ 0.31
BRCA1P38398 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC17.01■□□□□ 0.31
BRCA1P38398 AC008622.3-201ENST00000621170 600 ntBASIC17.01■□□□□ 0.31
BRCA1P38398 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC17.01■□□□□ 0.31
BRCA1P38398 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms